View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_high_20 (Length: 382)
Name: NF17082_high_20
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_20 |
 | |
|
| [»] scaffold0246 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0246 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: scaffold0246
Description:
Target: scaffold0246; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 19356 - 18994
Alignment:
| Q |
1 |
caatcgatgatggtttgtagcaaaccagaccattgttgtgaaactgaaagtgttggtgatggcactgctatcaaggtagcagcaaaagtgtcagggaaaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
19356 |
caatcgatgatggtttgtaacaaaccagaccattgttgtgaaactgaaagtgttggtgatggcactgctatcaaggtagcagcaaaagtgtccgggaaaa |
19257 |
T |
|
| Q |
101 |
agatgttgattcggatccacggtcaaaaacatgatggacttcttgttaaagtaatcacagagatacaaagttttcaactattagttgtcaataaccgtat |
200 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19256 |
agatgttgattcggatccattgccaaaaacatgatggacttcttgttaaagtaatcacagagatacaaagttttcaactattagttgtcaataaccgtat |
19157 |
T |
|
| Q |
201 |
tttagcttttggagattctttccacgacattacaatcattgctgaggtaaaggatattctctttaataaaacactcaga-nnnnnnnnncattaagttct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
19156 |
tttagcttttggagattctttccacgacattacagtcattgctgaggtaaaggatattctctttaataaaacactcagatttttttcttcattaagttct |
19057 |
T |
|
| Q |
300 |
ttatgcatcatcctttactaataaactaagttgtgccattgagacataaattaagaaactaaa |
362 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19056 |
ttctgcatcatcctttactaataaactaagttgtgccattgagacataaattaagaaattaaa |
18994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 40481417 - 40481055
Alignment:
| Q |
1 |
caatcgatgatggtttgtagcaaaccagaccattgttgtgaaactgaaagtgttggtgatggcactgctatcaaggtagcagcaaaagtgtcagggaaaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
40481417 |
caatcgatgatggtttgtaacaaaccagaccattgttgtgaaactgaaagtgttggtgatggcactgctatcaaggtagcagcaaaagtgtccgggaaaa |
40481318 |
T |
|
| Q |
101 |
agatgttgattcggatccacggtcaaaaacatgatggacttcttgttaaagtaatcacagagatacaaagttttcaactattagttgtcaataaccgtat |
200 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40481317 |
agatgttgattcggatccattgccaaaaacatgatggacttcttgttaaagtaatcacagagatacaaagttttcaactattagttgtcaataaccgtat |
40481218 |
T |
|
| Q |
201 |
tttagcttttggagattctttccacgacattacaatcattgctgaggtaaaggatattctctttaataaaacactcaga-nnnnnnnnncattaagttct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40481217 |
tttagcttttggagattctttccacgacattacagtcattgctgaggtaaaggatattctctttaataaaacactcagatttttttcttcattaagttct |
40481118 |
T |
|
| Q |
300 |
ttatgcatcatcctttactaataaactaagttgtgccattgagacataaattaagaaactaaa |
362 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40481117 |
ttctgcatcatcctttactaataaactaagttgtgccattgagacataaattaagaaattaaa |
40481055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 25112530 - 25112453
Alignment:
| Q |
172 |
tttcaactattagttgtcaataaccgtattttagcttttggagattctttccacgacattacaatcattgctgaggta |
249 |
Q |
| |
|
||||||||||| |||||||||||| || | ||| | |||||||||||| | ||||||||| ||||||||| ||||| |
|
|
| T |
25112530 |
tttcaactatttgttgtcaataacagtgtcttaccctttggagattctacgctcgacattaccatcattgctcaggta |
25112453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 249
Target Start/End: Original strand, 17125697 - 17125786
Alignment:
| Q |
160 |
gagatacaaagttttcaactattagttgtcaataaccgtattttagcttttggagattctttccacgacattacaatcattgctgaggta |
249 |
Q |
| |
|
||||| ||||| ||| ||||||| ||||||||||| || | ||| |||||||||||||| ||| ||||||||| || |||||| ||||| |
|
|
| T |
17125697 |
gagattcaaaggtttaaactattcgttgtcaataatagtgtcttaccttttggagattctatcctcgacattactattattgctcaggta |
17125786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University