View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_22 (Length: 378)
Name: NF17082_high_22
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 15 - 360
Target Start/End: Complemental strand, 33413477 - 33413113
Alignment:
| Q |
15 |
atactaatagggatgtgtgcaatattaattatattgtttatcaggtcaaagtcaatctggtttaactattgcataatcaaattttacc------------ |
102 |
Q |
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| T |
33413477 |
atactaataggtatgtgtgcaatattaattat--tgtttttcaagtcaaagtcaatctcgtttaactattgcatcatcaaattttaccgaccctacaagt |
33413380 |
T |
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| Q |
103 |
--------acggacactcctcaaattatgcgtattcaggtgtcaccgacacaacactgacactta-taattattacaatgaattatgtaatttaattgtt |
193 |
Q |
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| T |
33413379 |
tataaagcacgaacactcctcagattatgcgtattttggtgtcaccgacacaacactaacacttaattataattacactgaattatgtaatttaattgtt |
33413280 |
T |
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| Q |
194 |
tgatctgtattggaacatgcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaa |
293 |
Q |
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| T |
33413279 |
tgatctgtattggaacatgcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaa |
33413180 |
T |
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| Q |
294 |
tgcaaaaaactctctacattacaattagctgtgttctatggtgcactttacactctagcaataggaa |
360 |
Q |
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| T |
33413179 |
tgcaaaaaactctctacattacaattagctgtgttctatggtgcactttacactctagcaataggaa |
33413113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 212 - 353
Target Start/End: Original strand, 15728508 - 15728649
Alignment:
| Q |
212 |
gcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctaca |
311 |
Q |
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| T |
15728508 |
gcagggcatgtctatgcttacattatcagtttctcttccaagcctaaaaccacctgagtgtcatgaaatggatgtgacaaaatgcaaggaagcttctaca |
15728607 |
T |
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| Q |
312 |
ttacaattagctgtgttctatggtgcactttacactctagca |
353 |
Q |
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| T |
15728608 |
ttacagctagttgtgttctatggtgcactctacattctagca |
15728649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 212 - 353
Target Start/End: Original strand, 15736282 - 15736423
Alignment:
| Q |
212 |
gcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaatgcaaaaaactctctaca |
311 |
Q |
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| T |
15736282 |
gcagggtatgtctatgcttacactatcagtttctcttccaagcctaaaaccacctgagtgtcatgaaatggatgtgacaaaatgcaaggaagcttccaca |
15736381 |
T |
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| Q |
312 |
ttacaattagctgtgttctatggtgcactttacactctagca |
353 |
Q |
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| T |
15736382 |
ctacagctagttgtgttctatggtgcactctacactctagca |
15736423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 212 - 298
Target Start/End: Original strand, 15764948 - 15765034
Alignment:
| Q |
212 |
gcagggtatgtctttgcttacattagcagtgtcacttcctaccttaaagccacctgaatgccatgaattagatgtaacaaaatgcaa |
298 |
Q |
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| T |
15764948 |
gcagggtatgtgtctgcttacactatcagtttcccttccaagcctaaagccacctaaatgccatgaaatggatgttacaaaatgcaa |
15765034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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