View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_high_3 (Length: 607)

Name: NF17082_high_3
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_high_3
NF17082_high_3
[»] chr7 (12 HSPs)
chr7 (17-517)||(33815783-33816296)
chr7 (530-593)||(33816408-33816471)
chr7 (244-311)||(33174164-33174232)
chr7 (251-314)||(42710603-42710667)
chr7 (251-313)||(33326526-33326589)
chr7 (235-273)||(4998928-4998966)
chr7 (19-75)||(45429314-45429370)
chr7 (20-82)||(28243153-28243215)
chr7 (20-77)||(8770282-8770339)
chr7 (23-80)||(21222867-21222924)
chr7 (255-311)||(36655618-36655675)
chr7 (28-80)||(3239994-3240046)
[»] chr1 (20 HSPs)
chr1 (203-311)||(42400954-42401064)
chr1 (203-311)||(37583111-37583220)
chr1 (215-311)||(33780623-33780721)
chr1 (217-296)||(4659003-4659083)
chr1 (83-201)||(42483627-42483745)
chr1 (222-273)||(8514563-8514614)
chr1 (87-201)||(42401085-42401199)
chr1 (23-80)||(47210106-47210163)
chr1 (244-311)||(32544901-32544969)
chr1 (23-77)||(22336422-22336476)
chr1 (349-391)||(33259658-33259700)
chr1 (349-391)||(33279817-33279859)
chr1 (215-296)||(6268197-6268278)
chr1 (20-77)||(41970594-41970651)
chr1 (253-311)||(7712336-7712396)
chr1 (20-80)||(51587375-51587435)
chr1 (122-201)||(33780511-33780590)
chr1 (349-391)||(42400866-42400908)
chr1 (346-391)||(19512748-19512793)
chr1 (23-80)||(42523273-42523330)
[»] chr3 (8 HSPs)
chr3 (215-307)||(24744484-24744578)
chr3 (203-316)||(40485154-40485269)
chr3 (217-304)||(30285083-30285172)
chr3 (349-391)||(7885815-7885857)
chr3 (217-309)||(51463539-51463633)
chr3 (104-201)||(40485033-40485130)
chr3 (84-154)||(24744340-24744410)
chr3 (347-391)||(45707496-45707540)
[»] chr8 (7 HSPs)
chr8 (205-273)||(1334114-1334182)
chr8 (221-311)||(3348068-3348157)
chr8 (216-273)||(9415522-9415582)
chr8 (31-74)||(25487385-25487428)
chr8 (26-80)||(30075763-30075817)
chr8 (23-80)||(10172473-10172530)
chr8 (23-75)||(40957125-40957177)
[»] chr2 (8 HSPs)
chr2 (205-273)||(21455147-21455215)
chr2 (251-311)||(39445799-39445860)
chr2 (25-82)||(40288177-40288234)
chr2 (215-266)||(39401690-39401741)
chr2 (350-391)||(45154175-45154216)
chr2 (20-80)||(1465738-1465798)
chr2 (346-390)||(11915745-11915789)
chr2 (20-72)||(34820089-34820141)
[»] chr4 (14 HSPs)
chr4 (203-273)||(17694379-17694449)
chr4 (20-84)||(33129788-33129852)
chr4 (346-405)||(46061631-46061690)
chr4 (28-72)||(1820216-1820260)
chr4 (346-390)||(40946442-40946486)
chr4 (336-391)||(17694257-17694312)
chr4 (31-77)||(55882948-55882994)
chr4 (34-83)||(2742184-2742233)
chr4 (20-77)||(31053041-31053098)
chr4 (248-311)||(41248286-41248351)
chr4 (251-311)||(45047237-45047298)
chr4 (20-80)||(17517375-17517435)
chr4 (172-200)||(23359188-23359216)
chr4 (365-405)||(40982672-40982712)
[»] chr6 (10 HSPs)
chr6 (210-311)||(12975436-12975538)
chr6 (203-268)||(31766219-31766284)
chr6 (349-405)||(33099726-33099782)
chr6 (23-77)||(8514152-8514206)
chr6 (84-155)||(33099518-33099589)
chr6 (251-311)||(24141324-24141386)
chr6 (19-80)||(10153212-10153273)
chr6 (172-200)||(5002380-5002408)
chr6 (26-82)||(29071995-29072051)
chr6 (26-82)||(29104568-29104624)
[»] chr5 (10 HSPs)
chr5 (20-77)||(14717337-14717394)
chr5 (19-80)||(19117275-19117336)
chr5 (20-77)||(32892008-32892065)
chr5 (253-311)||(4942534-4942594)
chr5 (166-201)||(1309766-1309801)
chr5 (166-201)||(4747073-4747108)
chr5 (349-391)||(8433954-8433996)
chr5 (349-391)||(33494951-33494993)
chr5 (31-77)||(41579268-41579314)
chr5 (251-311)||(36974250-36974310)
[»] scaffold0578 (1 HSPs)
scaffold0578 (346-391)||(10145-10190)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 17 - 517
Target Start/End: Original strand, 33815783 - 33816296
Alignment:
Q  17 agattttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatacttagagcatgcataatggaaaccctaaatttag 116  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  33815783 agattttcgtattcattaattgatgtgacaatacattatttgatgcatgtgtaaaataattgtatatttagagcatccataatggaaaccctaaatttag 33815882  T
Q  117 agttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagcactcaatcactccaata-------------- 202  Q
    ||||||||||| ||||||||||||| || |||||||||||||       |||||||||||||||||| |||||||||||| |||||                  
T  33815883 agttcttaaactggtctcacgtgaacacgtcactctttaataatattttaataacagtatctaataaacactcaatcactacaatagagatcctctaaca 33815982  T
Q  203 -----tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatg 296  Q
         ||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| ||||||||| |||||||||||||    
T  33815983 aaatgtctaaaccggtcccaccactaactcttcatcatttacatttcaacaatacaacgattattttaataaaaagtagtgtggagcccacttaagaatg 33816082  T
Q  297 gggtcttaagtgagatcctctaggtcacccnnnnnnnnn-tctccaataaagatacctattaggtgtcgggtcttaaatggtgaagacctcaccatctga 395  Q
    |||| |||| |||     || |   |||||          |||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||| |||    
T  33816083 gggttttaaatgat----tccaa--cacccaaaaaaaaaatctccaataaagatacctattaggtgccggatcttaaatgatgaagacctcaccatatga 33816176  T
Q  396 gatgatcttacaaaacatattaattaaactcttaaaaatatcgagcatatcatacacactataaatgtaaaacaattttacacatatatccaattaaaca 495  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||  ||||||||  |||||    
T  33816177 gatggtcttacaaaacatattaattaaactcttgaaaatatcgagcatatcatacatacaataaatgtaaaacaattttacac--atatccaagaaaaca 33816274  T
Q  496 attttacacgtatatctaaatt 517  Q
    ||||||||| ||||||||||||    
T  33816275 attttacacatatatctaaatt 33816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 530 - 593
Target Start/End: Original strand, 33816408 - 33816471
Alignment:
Q  530 ctacttaggatttatctactcctatattctaatcttgtcatataaaaaataatctactcctatg 593  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  33816408 ctacttaggatttatctactcctatgttctaatcttgtcatataaaaaatagtctactcctatg 33816471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Original strand, 33174164 - 33174232
Alignment:
Q  244 caacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 311  Q
    ||||||||||||||||||||||| |||||| | ||||| | |||||||||||||  |||||||||||||    
T  33174164 caacaatacaatgattattttaagaaaaagtattgtggggcccacttaagaatgatgtcttaagtgaga 33174232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 42710603 - 42710667
Alignment:
Q  251 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgagatcc 314  Q
    ||||||||||||||| |||||||  |||||| || ||||||||||||| ||||||||||||||||    
T  42710603 acaatgattattttattaaaaagttgtgtggggttcacttaagaatggagtcttaagtgagatcc 42710667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 251 - 313
Target Start/End: Original strand, 33326526 - 33326589
Alignment:
Q  251 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgagatc 313  Q
    ||||||||||||||||| |||||  ||||||| ||||||||||| || ||||||||||||||||    
T  33326526 acaatgattattttaatgaaaagttgtgtggaatccacttaagattgaggtcttaagtgagatc 33326589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 273
Target Start/End: Complemental strand, 4998966 - 4998928
Alignment:
Q  235 tttacattccaacaatacaatgattattttaataaaaag 273  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  4998966 tttacattccaacaatacaataattattttaataaaaag 4998928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 45429314 - 45429370
Alignment:
Q  19 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataa 75  Q
    |||||||||||||||||||||  || ||| |||| |||||||| |||||||||||||    
T  45429314 attttcatattcattaattgacatggcaacaaatcatttgatgcatgtgtaaaataa 45429370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 20 - 82
Target Start/End: Complemental strand, 28243215 - 28243153
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 82  Q
    ||||||||||||||||||||| |||||| | || ||| ||||  ||| |||||||||||||||    
T  28243215 ttttcatattcattaattgatatgacaacacatcattggatgcgtgtttaaaataattgtata 28243153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 8770282 - 8770339
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||||||||| |||||||||||||||||   ||||||  || ||||||||||||||||    
T  8770282 ttttcatatttattaattgatgtgacaacttattattgaatatatgtgtaaaataatt 8770339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 21222867 - 21222924
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||||||||||||||||| ||| | || ||| ||| |||||||||||| ||||||    
T  21222867 tcatattcattaattgatgtgtcaacatatcattagatttatgtgtaaaatgattgta 21222924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 311
Target Start/End: Complemental strand, 36655675 - 36655618
Alignment:
Q  255 tgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 311  Q
    ||||||||||||| ||||| | |||||| |||||||||| ||| ||||||||||||||    
T  36655675 tgattattttaatcaaaagtaatgtggaatccacttaagcatgaggtcttaagtgaga 36655618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 28 - 80
Target Start/End: Original strand, 3239994 - 3240046
Alignment:
Q  28 ttcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||| |||| ||||||||| ||||||  || |||||||||||||||||||    
T  3239994 ttcattatttgacgtgacaatacattattgaatatatgtgtaaaataattgta 3240046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 7e-32; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 203 - 311
Target Start/End: Complemental strand, 42401064 - 42400954
Alignment:
Q  203 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaat-ggggt 300  Q
    |||||| |||| ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||  ||||    
T  42401064 tctaaatcggtcccaccacgaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtggggtccacttaagaataagggt 42400965  T
Q  301 cttaagtgaga 311  Q
    |||||||||||    
T  42400964 cttaagtgaga 42400954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 203 - 311
Target Start/End: Original strand, 37583111 - 37583220
Alignment:
Q  203 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtc 301  Q
    |||||| ||||||||||||| |||||||||| |||||||| |||| ||||||||||||||||||||||||| ||||||  |||||||||| |||||||||    
T  37583111 tctaaatcggttccaccactgactcttcatcatttacatttcaacgatacaatgattattttaataaaaagtagtgtgaggtccacttaaaaatggggtc 37583210  T
Q  302 ttaagtgaga 311  Q
    ||||||||||    
T  37583211 ttaagtgaga 37583220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 215 - 311
Target Start/End: Original strand, 33780623 - 33780721
Alignment:
Q  215 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatgg-ggtcttaagtgaga 311  Q
    |||| ||||| |||||||| ||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||  |||||||||||||    
T  33780623 ccactactaattcttcatcatttacgttccaacaatacaatgattattttaatgaaaagtagtgtggagtccacttaagaatggaagtcttaagtgaga 33780721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 217 - 296
Target Start/End: Original strand, 4659003 - 4659083
Alignment:
Q  217 accactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatg 296  Q
    ||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||| || ||||  ||||||||||||||    
T  4659003 accactaactcttcatcatttatattccaacaatataatgattattttaataaaaagcagcgtgggatccacttaagaatg 4659083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 83 - 201
Target Start/End: Original strand, 42483627 - 42483745
Alignment:
Q  83 cttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaata 182  Q
    |||||||||| ||||||||| |||||| |||| ||| |||||| ||| | ||| ||  |||||||||| ||| |||       |||||||||||||||||    
T  42483627 cttagagcatccataatggagaccctatattttgaggtcttaaccggatttcatgtttatacatcactattttataattttttaataacagtatctaata 42483726  T
Q  183 agcactcaatcactccaat 201  Q
    |||||||||||| ||||||    
T  42483727 agcactcaatcattccaat 42483745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 8514614 - 8514563
Alignment:
Q  222 taactcttcatcttttacattccaacaatacaatgattattttaataaaaag 273  Q
    |||||||| ||| ||||||||| |||||||||||||||||||||||||||||    
T  8514614 taactctttatcatttacattctaacaatacaatgattattttaataaaaag 8514563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 42401199 - 42401085
Alignment:
Q  87 gagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagca 186  Q
    |||||| || |||||| || || ||||| |||||||||||||| || || ||| | |||||||||||| |||       |||||||||| ||||||||||    
T  42401199 gagcatccacaatggagactctcaatttggagttcttaaacggatcccatgtgtacacatcactcttttataattttttaataacagtacctaataagca 42401100  T
Q  187 ctcaatcactccaat 201  Q
    |||| ||||||||||    
T  42401099 ctcagtcactccaat 42401085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 47210106 - 47210163
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||    
T  47210106 tcatattcattaatttatgtgacaacatattattagatgtatgtgtaaaatatttgta 47210163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 32544969 - 32544901
Alignment:
Q  244 caacaatacaatgattattttaataaaaagagtgtggagtccacttaagaatg-gggtcttaagtgaga 311  Q
    ||||| ||||||||||||||||||||||| | | | | ||||||||||||||| |||||||||||||||    
T  32544969 caacattacaatgattattttaataaaaatattatagggtccacttaagaatgagggtcttaagtgaga 32544901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Complemental strand, 22336476 - 22336422
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||||||||||||||||||| |  ||| ||||||||||| |||||||||||||||    
T  22336476 tcatattcattaattgatgtaatcatacattatttgatgcatgtgtaaaataatt 22336422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 33259658 - 33259700
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  33259658 tacctatttggtatcgggtcttaaatggtgaagacctcaccat 33259700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 33279817 - 33279859
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    |||||||| ||| ||||||||||||||||||||||||||||||    
T  33279817 tacctatttggtatcgggtcttaaatggtgaagacctcaccat 33279859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 215 - 296
Target Start/End: Complemental strand, 6268278 - 6268197
Alignment:
Q  215 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaata--aaaagagtgtggagtccacttaagaatg 296  Q
    ||||| |||||| |||||  ||||||  ||||||||||||||||||||||||||  |||| ||||||  |||||||||||||||    
T  6268278 ccacctctaacttttcattatttaca--ccaacaatacaatgattattttaataaaaaaatagtgtgaggtccacttaagaatg 6268197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 41970594 - 41970651
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||| ||||||||||||||||||| ||| | |||||||||| ||||| ||||||||||    
T  41970594 tttttatattcattaattgatgtggcaacatattatttgatatatgtataaaataatt 41970651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 7712336 - 7712396
Alignment:
Q  253 aatgattattttaataaaaaga-gtgtggagtccacttaagaa-tggggtcttaagtgaga 311  Q
    ||||||||||||| | |||||  |||||||||||||||||||| |||||||||||||||||    
T  7712336 aatgattattttatttaaaagttgtgtggagtccacttaagaattggggtcttaagtgaga 7712396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 51587435 - 51587375
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    |||||||||||||||||||| ||  ||| | ||| ||||||| ||||||||||||||||||    
T  51587435 ttttcatattcattaattgacgtagcaacacattgtttgatgcatgtgtaaaataattgta 51587375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 122 - 201
Target Start/End: Original strand, 33780511 - 33780590
Alignment:
Q  122 ttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagcactcaatcactccaat 201  Q
    |||||||| ||||||||| | ||||||| |||| |||       ||||||||||| ||||||||||||||||||| ||||    
T  33780511 ttaaacggatctcacgtgtacacatcacacttttataattttttaataacagtatataataagcactcaatcactacaat 33780590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 42400908 - 42400866
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    ||||||||||||  ||||||||||||| |||||||||||||||    
T  42400908 tacctattaggtaccgggtcttaaatgatgaagacctcaccat 42400866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Complemental strand, 19512793 - 19512748
Alignment:
Q  346 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||    
T  19512793 agatacctattaggtatcagatcttaaatggtgaagacctcgccat 19512748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 42523330 - 42523273
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||||||||||||| |||||||||||| ||| |||| ||   |||||||||||||    
T  42523330 tcatattcattaattgacgtgacaataaatcattagatgcatacataaaataattgta 42523273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 215 - 307
Target Start/End: Original strand, 24744484 - 24744578
Alignment:
Q  215 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatgg-ggtcttaagt 307  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||  ||||||||||||||| ||||||||||    
T  24744484 ccaccactaactcttcatcatttacattccaacaatacaatgattattttaataaaaagtagtgtgggatccacttaagaatggaggtcttaagt 24744578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 203 - 316
Target Start/End: Original strand, 40485154 - 40485269
Alignment:
Q  203 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaat-ggggt 300  Q
    |||||| |||| ||||||| ||||||||| | ||||||||||||||| ||||||||||||||||||||||| ||||||  ||||||||||||||   | |    
T  40485154 tctaaatcggtcccaccaccaactcttcagcatttacattccaacaaaacaatgattattttaataaaaagtagtgtgaggtccacttaagaataatgat 40485253  T
Q  301 cttaagtgagatcctc 316  Q
    ||||||||||||||||    
T  40485254 cttaagtgagatcctc 40485269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 217 - 304
Target Start/End: Complemental strand, 30285172 - 30285083
Alignment:
Q  217 accactaactcttcatcttttacattccaacaatacaatgattattttaata-aaaagagtgtggagtccacttaagaatg-gggtctta 304  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||||| |||| ||||||| | |||||||| |||| ||||||||    
T  30285172 accactaactcttcataatttacatttcaacaatacaatgattattttaataaaaaatagtgtggggcccacttaaaaatgagggtctta 30285083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 349 - 391
Target Start/End: Complemental strand, 7885857 - 7885815
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    |||||||||||| ||||||||||||||||||||||||||||||    
T  7885857 tacctattaggtatcgggtcttaaatggtgaagacctcaccat 7885815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 217 - 309
Target Start/End: Complemental strand, 51463633 - 51463539
Alignment:
Q  217 accactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatg-gggtcttaagtga 309  Q
    ||||||||||||||||  |||| ||| ||||| || |||||||||||||| ||| || ||||||| ||||||||||||||| || ||||||||||    
T  51463633 accactaactcttcattatttatatttcaacagtaaaatgattattttaacaaagagtagtgtggggtccacttaagaatgtggatcttaagtga 51463539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 40485033 - 40485130
Alignment:
Q  104 accctaaatttagagttcttaaacgggtctcacgtgaatacatcactctttaatannnnnnnaataacagtatctaataagcactcaatcactccaat 201  Q
    ||||| ||||||||||||||| ||||||| |||||| | |||||| ||||| |||       ||||| |||| |||||||||| |||| |||||||||    
T  40485033 accctcaatttagagttcttagacgggtcccacgtgtaaacatcattcttttataattttttaataatagtacctaataagcattcaaccactccaat 40485130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 24744340 - 24744410
Alignment:
Q  84 ttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttt 154  Q
    ||||||||| || |||||| | ||| ||||| |||||||||||  ||||||||||| | ||||||||||||    
T  24744340 ttagagcatccacaatggagatcctgaatttggagttcttaaataggtctcacgtgtacacatcactcttt 24744410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 391
Target Start/End: Complemental strand, 45707540 - 45707496
Alignment:
Q  347 gatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    |||| |||||||||  ||| |||||||||||||||||||||||||    
T  45707540 gatatctattaggtaccggatcttaaatggtgaagacctcaccat 45707496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 1334114 - 1334182
Alignment:
Q  205 taaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag 273  Q
    |||| |||||||||||||||||| ||||| |||||||||||||||||||  ||||||||||||||||||    
T  1334114 taaatcggttccaccactaactcctcatcgtttacattccaacaatacaccgattattttaataaaaag 1334182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 221 - 311
Target Start/End: Complemental strand, 3348157 - 3348068
Alignment:
Q  221 ctaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 311  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||  ||  ||||||||||||||    
T  3348157 ctaactcttcaacatttacattccaacaatacaatgattattttaataaaaagtagcgtggaatccacttaatgat--ggtcttaagtgaga 3348068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 9415522 - 9415582
Alignment:
Q  216 caccactaactcttcatcttttacattccaacaatacaatgatta---ttttaataaaaag 273  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||   |||||||||||||    
T  9415522 caccactaactcttcatcatttacatttcaacaatataatgattattattttaataaaaag 9415582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 25487428 - 25487385
Alignment:
Q  31 attaattgatgtgacaataaattatttgatgtatgtgtaaaata 74  Q
    ||||||||||||||||||| ||||||  ||||||||||||||||    
T  25487428 attaattgatgtgacaatacattattgaatgtatgtgtaaaata 25487385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 30075817 - 30075763
Alignment:
Q  26 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||||||||||||||||||||  |||||  ||| || |||||||||||||||    
T  30075817 tattcattaattgatgtgacaatattttattaaatgcatatgtaaaataattgta 30075763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 80
Target Start/End: Original strand, 10172473 - 10172530
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||||| ||||||| |||||||   || |||||||| ||||||||||||||||||    
T  10172473 tcatattcactaattgacgtgacaacgcatcatttgatgcatgtgtaaaataattgta 10172530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 40957177 - 40957125
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataa 75  Q
    ||||||||||||||| | |||||||   |||||| ||||||||||||||||||    
T  40957177 tcatattcattaattaacgtgacaacttattattagatgtatgtgtaaaataa 40957125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 21455147 - 21455215
Alignment:
Q  205 taaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag 273  Q
    |||| ||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||||||    
T  21455147 taaatcggttccacgactaactcttcatcatttacattccaacaatacagtaattattttaataaaaag 21455215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 39445860 - 39445799
Alignment:
Q  251 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgaga 311  Q
    ||||||||||||||| |||||||  |||||| ||||||||||||||||||||||||||||||    
T  39445860 acaatgattattttattaaaaagttgtgtggggtccacttaagaatggggtcttaagtgaga 39445799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 40288177 - 40288234
Alignment:
Q  25 atattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 82  Q
    ||||| ||||||||| ||||||||| ||||||  ||||||||||||||||||||||||    
T  40288177 atatttattaattgacgtgacaatatattattaaatgtatgtgtaaaataattgtata 40288234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 39401741 - 39401690
Alignment:
Q  215 ccaccactaactcttcatcttttacattccaacaatacaatgattattttaa 266  Q
    |||||||||| | |||||| ||||||||||||| ||||||||||||||||||    
T  39401741 ccaccactaatttttcatcatttacattccaactatacaatgattattttaa 39401690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 391
Target Start/End: Complemental strand, 45154216 - 45154175
Alignment:
Q  350 acctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    ||||||||||| ||||||||||||| |||||||| |||||||    
T  45154216 acctattaggtatcgggtcttaaattgtgaagacatcaccat 45154175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 1465798 - 1465738
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    |||||||||| ||||||||| ||||||| | || ||| |||| ||||||||||||| ||||    
T  1465798 ttttcatatttattaattgacgtgacaacacatcattggatgcatgtgtaaaataactgta 1465738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 346 - 390
Target Start/End: Complemental strand, 11915789 - 11915745
Alignment:
Q  346 agatacctattaggtgtcgggtcttaaatggtgaagacctcacca 390  Q
    |||||||||||| || || ||| ||||||||||||||||||||||    
T  11915789 agatacctattaagtatcaggttttaaatggtgaagacctcacca 11915745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 34820141 - 34820089
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaa 72  Q
    |||||||||||||||||||| ||||||| |  | ||| |||||||||||||||    
T  34820141 ttttcatattcattaattgacgtgacaacatttgattagatgtatgtgtaaaa 34820089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 203 - 273
Target Start/End: Complemental strand, 17694449 - 17694379
Alignment:
Q  203 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag 273  Q
    |||||| ||||  |||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||    
T  17694449 tctaaatcggtctcaccactaactcttcatcatttacattccaacactacaatgattattttaatgaaaag 17694379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 20 - 84
Target Start/End: Complemental strand, 33129852 - 33129788
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatact 84  Q
    ||||||||||| ||||||||  | ||||||||| ||||||||| |||||||||||||||||||||    
T  33129852 ttttcatattcgttaattgactttacaataaatcatttgatgtgtgtgtaaaataattgtatact 33129788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 346 - 405
Target Start/End: Original strand, 46061631 - 46061690
Alignment:
Q  346 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatctta 405  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||| | |||| |||||    
T  46061631 agatacctattaggtatcggatcttaaatggtgaagacatcaccatcggggatggtctta 46061690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 28 - 72
Target Start/End: Original strand, 1820216 - 1820260
Alignment:
Q  28 ttcattaattgatgtgacaataaattatttgatgtatgtgtaaaa 72  Q
    |||||||||||||| ||||||| || |||||||||||||||||||    
T  1820216 ttcattaattgatgcgacaatacatcatttgatgtatgtgtaaaa 1820260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 346 - 390
Target Start/End: Original strand, 40946442 - 40946486
Alignment:
Q  346 agatacctattaggtgtcgggtcttaaatggtgaagacctcacca 390  Q
    |||||||||||||||  ||| ||||||||||||||||||||||||    
T  40946442 agatacctattaggtaccggatcttaaatggtgaagacctcacca 40946486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 391
Target Start/End: Complemental strand, 17694312 - 17694257
Alignment:
Q  336 tctccaataaagatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    ||||||||||||||| ||||||| | ||||||||||||| | ||||| ||||||||    
T  17694312 tctccaataaagataactattagatatcgggtcttaaatagcgaagatctcaccat 17694257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 55882994 - 55882948
Alignment:
Q  31 attaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    ||||||||||||| ||||| ||||||| |||||| ||||||||||||    
T  55882994 attaattgatgtgtcaatatattatttaatgtatatgtaaaataatt 55882948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Complemental strand, 2742233 - 2742184
Alignment:
Q  34 aattgatgtgacaataaattatttgatgtatgtgtaaaataattgtatac 83  Q
    |||||| ||||||| | |||||| ||||||||| ||||||||||||||||    
T  2742233 aattgacgtgacaacatattattggatgtatgtttaaaataattgtatac 2742184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 31053041 - 31053098
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||||||||||||||||||| | ||||| | || ||| |||| |||||||||||||||    
T  31053041 ttttcatattcattaattgacgcgacaacacatcattggatgcatgtgtaaaataatt 31053098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 311
Target Start/End: Complemental strand, 41248351 - 41248286
Alignment:
Q  248 aatacaatgattattttaataaaaagagtgtggagtcc-acttaagaatg-gggtcttaagtgaga 311  Q
    ||||||||||||||||||||||||  | ||||| | || ||||||||||| |||||||||||||||    
T  41248351 aatacaatgattattttaataaaagtattgtgggggccaacttaagaatgagggtcttaagtgaga 41248286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 45047237 - 45047298
Alignment:
Q  251 acaatgattattttaataaaaaga-gtgtggagtccacttaagaatggggtcttaagtgaga 311  Q
    ||||||||||||||| ||||| |  |||||| | ||||||||||||| ||||||||||||||    
T  45047237 acaatgattattttattaaaatgttgtgtggggcccacttaagaatgaggtcttaagtgaga 45047298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 20 - 80
Target Start/End: Complemental strand, 17517435 - 17517375
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    |||||||||| ||||||||||||  ||| | || |||||||| ||||||||||| ||||||    
T  17517435 ttttcatatttattaattgatgtagcaacacatcatttgatgaatgtgtaaaatgattgta 17517375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 200
Target Start/End: Complemental strand, 23359216 - 23359188
Alignment:
Q  172 agtatctaataagcactcaatcactccaa 200  Q
    |||||||||||||||||||||||||||||    
T  23359216 agtatctaataagcactcaatcactccaa 23359188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 405
Target Start/End: Complemental strand, 40982712 - 40982672
Alignment:
Q  365 ggtcttaaatggtgaagacctcaccatctgagatgatctta 405  Q
    ||||||||||||||||||||||||||||  ||||| |||||    
T  40982712 ggtcttaaatggtgaagacctcaccatcgtagatgctctta 40982672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 210 - 311
Target Start/End: Original strand, 12975436 - 12975538
Alignment:
Q  210 cggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtg 308  Q
    ||||||||| |||||||||| ||| ||||||||  || |||| ||||||||||||||||||||| | || | |||||||||||||||| ||| |||| ||    
T  12975436 cggttccactactaactctttatcgtttacattttaaaaatataatgattattttaataaaaagtactgcgaagtccacttaagaatgtggtattaaatg 12975535  T
Q  309 aga 311  Q
    |||    
T  12975536 aga 12975538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 203 - 268
Target Start/End: Complemental strand, 31766284 - 31766219
Alignment:
Q  203 tctaaaccggttccaccactaactcttcatcttttacattccaacaatacaatgattattttaata 268  Q
    |||||| || |||||||||| |||||||||| |||||||||| |||||||||||||  ||||||||    
T  31766284 tctaaatcgattccaccactgactcttcatcatttacattcctacaatacaatgatcgttttaata 31766219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 349 - 405
Target Start/End: Original strand, 33099726 - 33099782
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccatctgagatgatctta 405  Q
    ||||||||| || |||| |||||||||||||||||||||||||  ||||||||||||    
T  33099726 tacctattaagtatcggatcttaaatggtgaagacctcaccattagagatgatctta 33099782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 77
Target Start/End: Original strand, 8514152 - 8514206
Alignment:
Q  23 tcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    ||||||| ||||||||||||||||||| || |||  |||||||||||||||||||    
T  8514152 tcatatttattaattgatgtgacaatacatcattgcatgtatgtgtaaaataatt 8514206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 33099518 - 33099589
Alignment:
Q  84 ttagagcatgcataatggaaaccctaaatttagagttcttaaacgggtctcacgtgaatacatcactcttta 155  Q
    ||||||||| || |||||| ||||| ||||| ||| ||||||||||||||||  || |||| ||||||||||    
T  33099518 ttagagcatccacaatggagaccctcaattttgaggtcttaaacgggtctcatatgtatacgtcactcttta 33099589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 251 - 311
Target Start/End: Complemental strand, 24141386 - 24141324
Alignment:
Q  251 acaatgattattttaataaaaag-agtgtggagtccacttaagaatg-gggtcttaagtgaga 311  Q
    ||||||||||||||| |||||||  |||||||| |||||||||||||  ||||||||||||||    
T  24141386 acaatgattattttattaaaaagttgtgtggagaccacttaagaatgaaggtcttaagtgaga 24141324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 10153212 - 10153273
Alignment:
Q  19 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    ||||||| ||| ||||||||| ||||||| | ||||||  ||| ||||||||||||||||||    
T  10153212 attttcagatttattaattgacgtgacaacacattattgaatgcatgtgtaaaataattgta 10153273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 172 - 200
Target Start/End: Original strand, 5002380 - 5002408
Alignment:
Q  172 agtatctaataagcactcaatcactccaa 200  Q
    |||||||||||||||||||||||||||||    
T  5002380 agtatctaataagcactcaatcactccaa 5002408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 29071995 - 29072051
Alignment:
Q  26 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 82  Q
    ||||||||||||| |||||||| | || |||  |||||||| |||||||||||||||    
T  29071995 tattcattaattggtgtgacaacacataattgaatgtatgtataaaataattgtata 29072051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 29104568 - 29104624
Alignment:
Q  26 tattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgtata 82  Q
    ||||||||||||| |||||||| | || |||  |||||||| |||||||||||||||    
T  29104568 tattcattaattggtgtgacaacacataattgaatgtatgtataaaataattgtata 29104624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Original strand, 14717337 - 14717394
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||||||||||||||||||||||||||| | || ||| |||| |||||||||||||||    
T  14717337 ttttcatattcattaattgatgtgacaacacatcattagatgcatgtgtaaaataatt 14717394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 19117275 - 19117336
Alignment:
Q  19 attttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataattgta 80  Q
    |||||||| |||||||||| ||||||||| | |||||| |||| ||||||||||||||||||    
T  19117275 attttcatgttcattaattaatgtgacaacacattattggatgcatgtgtaaaataattgta 19117336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 20 - 77
Target Start/End: Complemental strand, 32892065 - 32892008
Alignment:
Q  20 ttttcatattcattaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||||||||||||||||| ||  |||||||||||||| |||| |||||||||||||||    
T  32892065 ttttcatattcattaattaatacgacaataaattattggatgcatgtgtaaaataatt 32892008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 4942534 - 4942594
Alignment:
Q  253 aatgattattttaataaaaaga-gtgtggagtccacttaagaatg-gggtcttaagtgaga 311  Q
    ||||||||||||| |||||||  |||||| ||||||||||||||| |||||||||||||||    
T  4942534 aatgattattttattaaaaagttgtgtggggtccacttaagaatgagggtcttaagtgaga 4942594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 1309766 - 1309801
Alignment:
Q  166 aataacagtatctaataagcactcaatcactccaat 201  Q
    ||||| ||||||||||||||||||||||||||||||    
T  1309766 aataatagtatctaataagcactcaatcactccaat 1309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 201
Target Start/End: Original strand, 4747073 - 4747108
Alignment:
Q  166 aataacagtatctaataagcactcaatcactccaat 201  Q
    ||||||| ||||||||||||||||||||||||||||    
T  4747073 aataacattatctaataagcactcaatcactccaat 4747108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 8433954 - 8433996
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    ||||||||||||  | |||||||||||||||||||||||||||    
T  8433954 tacctattaggtaccaggtcttaaatggtgaagacctcaccat 8433996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 391
Target Start/End: Original strand, 33494951 - 33494993
Alignment:
Q  349 tacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    |||||| ||||| |||||||||||||||| |||||||||||||    
T  33494951 tacctaataggtatcgggtcttaaatggttaagacctcaccat 33494993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 41579314 - 41579268
Alignment:
Q  31 attaattgatgtgacaataaattatttgatgtatgtgtaaaataatt 77  Q
    |||||||||||||| || | |||||| ||||||||||||||||||||    
T  41579314 attaattgatgtgaaaacacattattggatgtatgtgtaaaataatt 41579268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 311
Target Start/End: Original strand, 36974250 - 36974310
Alignment:
Q  251 acaatgattattttaataaaaag-agtgtggagtccacttaagaatggggtcttaagtgaga 311  Q
    ||||| |||||||||||||||||  |||||| |  |||||||||||||||||||||||||||    
T  36974250 acaattattattttaataaaaagtggtgtgg-gatcacttaagaatggggtcttaagtgaga 36974310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 391
Target Start/End: Original strand, 10145 - 10190
Alignment:
Q  346 agatacctattaggtgtcgggtcttaaatggtgaagacctcaccat 391  Q
    ||||||||||||||| || | |||||||||||||||||||| ||||    
T  10145 agatacctattaggtatcagatcttaaatggtgaagacctcgccat 10190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University