View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_high_31 (Length: 322)

Name: NF17082_high_31
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_high_31
NF17082_high_31
[»] chr1 (5 HSPs)
chr1 (14-299)||(18618328-18618613)
chr1 (14-105)||(24035171-24035262)
chr1 (14-63)||(16560738-16560787)
chr1 (15-106)||(47762706-47762797)
chr1 (30-80)||(3550569-3550619)
[»] chr4 (4 HSPs)
chr4 (17-80)||(36186502-36186565)
chr4 (18-79)||(39734596-39734657)
chr4 (14-63)||(1586940-1586988)
chr4 (17-60)||(21327913-21327956)
[»] chr7 (2 HSPs)
chr7 (14-80)||(39825916-39825982)
chr7 (30-87)||(32182046-32182103)
[»] chr5 (2 HSPs)
chr5 (17-104)||(2588360-2588447)
chr5 (14-108)||(12966963-12967057)
[»] chr8 (2 HSPs)
chr8 (30-88)||(13854147-13854205)
chr8 (70-108)||(16636550-16636588)
[»] chr6 (1 HSPs)
chr6 (14-63)||(7763838-7763887)
[»] chr3 (1 HSPs)
chr3 (19-60)||(9197015-9197056)


Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 14 - 299
Target Start/End: Complemental strand, 18618613 - 18618328
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaaggatataagttagtatgacccttttcg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||   |||||||||||||||||||||||    
T  18618613 ttctcaagaagttaagaattaatttttcataataaatatttgctattaatagaattcttaatatgtgccttaagagcataagttagtatgacccttttcg 18618514  T
Q  114 caatataccgaaacccaatcaaattttaggtactaaagaattctcctaataaatatgttgatttactaataaataggcttggtttaccaagctgcaaatt 213  Q
    |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  18618513 caatatacggaaacccaatcaaattctaggtactaaagaattctcctaataaatatgttaatttactaataaataggcttggtttaccaagctacaaatt 18618414  T
Q  214 tgtaaatgtttgaaaggttttgacctagcttccccttgttccctttttattttgaatatagttagatggtgctctttgcatcatca 299  Q
    |||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18618413 tgtaaatgtttgaaaggttttggcttagcttccccttgttccccttttattttgaatatagttagatggtgctctttgcatcatca 18618328  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 14 - 105
Target Start/End: Complemental strand, 24035262 - 24035171
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaaggatataagttagtatgac 105  Q
    ||||||| ||||||||||||||||||||| |||||||||||  ||||||| ||||| ||||||||||||||||| | ||||||||| |||||    
T  24035262 ttctcaaaaagttaagaattaatttttcacaataaatatttattattaatgaaattcttaatatgtgccctaagaacataagttagcatgac 24035171  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 16560787 - 16560738
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaat 63  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  16560787 ttctcaagaaggtaagaattaatttttcataacaaatatttgctattaat 16560738  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 106
Target Start/End: Complemental strand, 47762797 - 47762706
Alignment:
Q  15 tctcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaaggatataagttagtatgacc 106  Q
    |||||| ||||||| |||||| |||||||||||||||||| |||||||   |||| |||| |||||| ||||||  | ||||||| ||||||    
T  47762797 tctcaataagttaaaaattaaattttcataataaatatttcctattaaaggaattcttaacatgtgctctaagggcacaagttagcatgacc 47762706  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 3550619 - 3550569
Alignment:
Q  30 aattaatttttcataataaatatttgctattaataaaatttttaatatgtg 80  Q
    ||||| ||||||||||||||||||||||||||||  |||| |||| |||||    
T  3550619 aattagtttttcataataaatatttgctattaatggaattcttaaaatgtg 3550569  T

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Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 36186565 - 36186502
Alignment:
Q  17 tcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtg 80  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||  |||| ||||||||||    
T  36186565 tcaagaagttaagaattaatttctcataataaatatttgctattaattgaattcttaatatgtg 36186502  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 39734657 - 39734596
Alignment:
Q  18 caagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgt 79  Q
    ||||||||||  ||||||||||| ||||||||||||| |||||||||||||| |||| ||||    
T  39734657 caagaagttagaaattaattttttataataaatatttactattaataaaattcttaacatgt 39734596  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 1586988 - 1586940
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaat 63  Q
    |||||||||||||||||||||| |||||| |||||||||||| |||||||    
T  1586988 ttctcaagaagttaagaattaa-ttttcaaaataaatatttgatattaat 1586940  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 21327956 - 21327913
Alignment:
Q  17 tcaagaagttaagaattaatttttcataataaatatttgctatt 60  Q
    |||||||||| | ||||||||||||||||||||||||| |||||    
T  21327956 tcaagaagttgaaaattaatttttcataataaatatttactatt 21327913  T

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Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 39825916 - 39825982
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtg 80  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||| |||| |||||    
T  39825916 ttctcaagaagttaagaattaaatttttataataaatatttgctattaatgaaattcttaacatgtg 39825982  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 32182046 - 32182103
Alignment:
Q  30 aattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaag 87  Q
    ||||||||||||| ||||||| ||||||||||||| |||| |||| | |||| |||||    
T  32182046 aattaatttttcagaataaatgtttgctattaatagaattcttaacacgtgctctaag 32182103  T

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Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 2588447 - 2588360
Alignment:
Q  17 tcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaaggatataagttagtatga 104  Q
    |||||||||||||||||||||||||||| ||||||||| | | |||| ||||| |||| ||||| |||||| | ||||||||| ||||    
T  2588447 tcaagaagttaagaattaatttttcatagtaaatatttaccactaatgaaattcttaacatgtgtcctaagaacataagttagcatga 2588360  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 12966963 - 12967057
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaaggatataagttagtatgaccct 108  Q
    ||||||| ||||| | || |||||||||  |||||||||||||||||  || |||| |||| ||||||||| |||| | | ||||| ||||||||    
T  12966963 ttctcaaaaagttgaaaactaatttttctcaataaatatttgctatttgtagaattcttaacatgtgcccttaggacagatgttagcatgaccct 12967057  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 13854147 - 13854205
Alignment:
Q  30 aattaatttttcataataaatatttgctattaataaaatttttaatatgtgccctaagg 88  Q
    ||||||||||||||||||||||||||||||||||| |||| |||| ||||||| |||||    
T  13854147 aattaatttttcataataaatatttgctattaatagaattcttaacatgtgccttaagg 13854205  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 108
Target Start/End: Original strand, 16636550 - 16636588
Alignment:
Q  70 tttaatatgtgccctaaggatataagttagtatgaccct 108  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  16636550 tttaatatgtgccctaaagacataagttagtatgaccct 16636588  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Complemental strand, 7763887 - 7763838
Alignment:
Q  14 ttctcaagaagttaagaattaatttttcataataaatatttgctattaat 63  Q
    |||||| |||||||| |||||||||||||||||||||||||| |||||||    
T  7763887 ttctcatgaagttaaaaattaatttttcataataaatatttgttattaat 7763838  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 9197056 - 9197015
Alignment:
Q  19 aagaagttaagaattaatttttcataataaatatttgctatt 60  Q
    |||||||||| |||||||||||||| ||||||||||| ||||    
T  9197056 aagaagttaaaaattaatttttcatgataaatatttgatatt 9197015  T

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