View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_36 (Length: 294)
Name: NF17082_high_36
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_36 |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 276
Target Start/End: Original strand, 2088476 - 2088751
Alignment:
| Q |
1 |
gagctagttgtcaaccaggtttgttctattatatgctgctgaggttatatattatggagctgattcatttttcttttctaaacaatatactaagatatgt |
100 |
Q |
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| T |
2088476 |
gagctagttgtcaaccaggtttgttctattatatgctgctgaggttatatattatggagctgattcatttttcttttctaaacaatatactaagatatgt |
2088575 |
T |
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| Q |
101 |
tattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaagggtgactttcactc |
200 |
Q |
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| T |
2088576 |
tattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaagggtgactttcactc |
2088675 |
T |
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| Q |
201 |
atgcaccatccaacacattcgcagggtatttatttagcgatttagcgctttattgttcatgatcactcactcgaat |
276 |
Q |
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| T |
2088676 |
atgcaccatccaacacattcgcagggtatttatttagcgatttagcgctttattgttcatgatcactcactcgaat |
2088751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 2098319 - 2098451
Alignment:
| Q |
66 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
165 |
Q |
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| T |
2098319 |
catttttcttttctaaacaatttaccaacatatgttattg-ttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgc |
2098417 |
T |
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| Q |
166 |
aacgaggctttggagctgaagggtgactttcact |
199 |
Q |
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| T |
2098418 |
aatgaggccttggagctaagggataactttcact |
2098451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 66 - 199
Target Start/End: Original strand, 2106779 - 2106909
Alignment:
| Q |
66 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
165 |
Q |
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| T |
2106779 |
catttttcttttctaaacaatttaccaacat--gttattg-ttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgc |
2106875 |
T |
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| Q |
166 |
aacgaggctttggagctgaagggtgactttcact |
199 |
Q |
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| T |
2106876 |
aatgaggctttggagctaagggataactttcact |
2106909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 230
Target Start/End: Original strand, 2054364 - 2054499
Alignment:
| Q |
95 |
atatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaagggtgactt |
194 |
Q |
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| T |
2054364 |
atatgttattggttttgcaacagtttctgggttcatggaaaatcaacaaccagtatttatggaacttgtgcaatgaggctttgcagctgaaggaaagctt |
2054463 |
T |
|
| Q |
195 |
tcactcatgcaccatccaacacattcgcagggtatt |
230 |
Q |
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| T |
2054464 |
tcactcattcagcatccaacacattcctagggtatt |
2054499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 100 - 186
Target Start/End: Original strand, 2102603 - 2102689
Alignment:
| Q |
100 |
ttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaag |
186 |
Q |
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| T |
2102603 |
ttattgggtttgcaacagtttgagggttcctggaaagtcaacaatccaaatttaaggaacctgtgcaatgaggctgtggagctgaag |
2102689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 2065558 - 2065607
Alignment:
| Q |
69 |
ttttcttttctaaacaatatactaagatatgttattggttttgcaacagt |
118 |
Q |
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| T |
2065558 |
ttttctttgctaaacaatttaccaacatatgttatttgttttgcaacagt |
2065607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 131
Target Start/End: Original strand, 2058333 - 2058369
Alignment:
| Q |
95 |
atatgttattggttttgcaacagtttaagggttcatg |
131 |
Q |
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| T |
2058333 |
atatgttattggttttgcaacagtttttgggttcatg |
2058369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 39183084 - 39182998
Alignment:
| Q |
100 |
ttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgtaacgaggctttggagctgaag |
186 |
Q |
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| T |
39183084 |
ttattggttttgcaacagtttgagggttcctggaaagtcaacaacccaaatttaaggaacctttgtaatgaggctgtggagctgaag |
39182998 |
T |
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