View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_high_37 (Length: 292)

Name: NF17082_high_37
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_high_37
NF17082_high_37
[»] chr1 (1 HSPs)
chr1 (13-292)||(33413515-33413794)


Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 292
Target Start/End: Complemental strand, 33413794 - 33413515
Alignment:
Q  13 aatatcgtgcgtacgttgacttaaaaggaatgagcaaaatcaaaagcgaattttcccatcataatgttttgaagnnnnnnnnn-ccacatgcagcacatt 111  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| |          ||||||| ||||||||    
T  33413794 aatatcgtgcgtacgttgaattaaa-ggaatgagcaaaatcaaaagcaaattttcccatcataatgttttgatgttttttttttccacatggagcacatt 33413696  T
Q  112 ttcaagttataaacaccactaaaagttcataaaatcaatctcaagataaggacatggtgctactgtggggctagtgggttgggatgaagcactataatga 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33413695 ttcaagttataaacaccactaaaagttcataaaatcaatctcaagataaggacatggtgctactgtggggctagtgggttgggatgaagcactataatga 33413596  T
Q  212 caattaacaaatcatatagattttagaagaatcttatagctaacagtggcaaaattgtctagtagtatttgcagcatgctc 292  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33413595 caattaacaaatcatatagattatagaagaatcttatagctaacagtggcaaaattgtctagtagtatttgcagcatgctc 33413515  T

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