View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_41 (Length: 280)
Name: NF17082_high_41
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_41 |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 65 - 263
Target Start/End: Original strand, 41445419 - 41445616
Alignment:
| Q |
65 |
cattcccgcgtgaaggcaagacaatccgttacctaatactaatcccatctttctgttagttgcttctccacaatactaaaaatgctgttacccttatcct |
164 |
Q |
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| T |
41445419 |
cattcccgcgtgaagacaagacaatccgttacctaataccaatcccatctttctgttagttgcttctccacaatactaaaaatgttgttacccttatcct |
41445518 |
T |
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| Q |
165 |
tcatgcatgcatatttcaccttttaactccttataattttgcttcttattttcatttattcaattcaacttttatgccttttgcagttatgctggatat |
263 |
Q |
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| T |
41445519 |
tcatgcatgcatattgcaccttttaactccttataattttgcttcttattttcatttattcaattcaac-tttatgctttttgcagtgatgctggatat |
41445616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 116 - 253
Target Start/End: Original strand, 41453573 - 41453714
Alignment:
| Q |
116 |
tctgttagttgcttctccacaat----actaaaaatgctgttacccttatccttcatgcatgcatatttcaccttttaactccttataattttgcttctt |
211 |
Q |
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| T |
41453573 |
tctgttagttgcttcttcacaaactgcactaaaaatgttcttacccttatccttcatgcatgcatatttcaccttttacctcattataactttacttctt |
41453672 |
T |
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| Q |
212 |
attttcatttattcaattcaacttttatgccttttgcagtta |
253 |
Q |
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| T |
41453673 |
attttcatttattcaattcaactttcatgctttttgcagtta |
41453714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 41453436 - 41453494
Alignment:
| Q |
19 |
acaaaattagtgggaaaaggaggaaaatgttagaagtccacaacgtcattcccgcgtgaa |
78 |
Q |
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| T |
41453436 |
acaaagttagtgggaaacggagcaaaatgtt-gaagtccacaaagtcattcccgcgtgaa |
41453494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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