View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_high_5 (Length: 580)
Name: NF17082_high_5
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 25264979 - 25264418
Alignment:
| Q |
1 |
tgggtgtgtgttgtagtgactgacggaaggggtagaagaaacaatcttgatggagaaaccgatgcaaacattcttgatatggatatgtaactaggtgacc |
100 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25264979 |
tgggtgtgtgttgtagtgactggcggaagaggtagaagaaacaatcttgatggagaaaccgatgcaaacattcttgatatggatatgtaactaggtgacc |
25264880 |
T |
|
| Q |
101 |
cttagtcagaacaaacatattatctcataagtctcgaccctcttagtatgcaggttcataatctcgaccaccggcaccctgagcatgctaatatattctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
25264879 |
cttagtcagaacaaacatattatctcataagtctcgaccctcttagtatgcaggttcataatcccgaccaccggcaccttgagcgtgctaatatattctt |
25264780 |
T |
|
| Q |
201 |
aactgcatcaatatatactaattagtaaataacatcaaatttaacattttgtacaattaattaagatattgtgtgtttattttatctcatgtagtgtcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25264779 |
aactgcatcaatatatactaattagtaaataacatcaaatttaacattttgtacaattaattaagatattgtgtgtttattttatctcatgtagtgtcat |
25264680 |
T |
|
| Q |
301 |
gtaaccaattccaattgcttcgtcctatactaacacacattatttagctctcggtataagtaggttaggatagtcgccctcccgagagaagtcatataca |
400 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25264679 |
gtaaccaa--ccaattgcttcgtcctatactaacacacattatttagctctcggtataagtaggttagg-tagtcgccctcccgagagaagtcatataca |
25264583 |
T |
|
| Q |
401 |
ccatctctggatctcgaaaatactccaagtacaacaaatcaacatacttggcgctcttatttctcaaagagtggtgcccaccaagaaaagtaggtacatc |
500 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
25264582 |
ccatctctagatctcgaaaatactccaagtacaacaaatcaacatacttggcgctcttatttctcaaagagaggtgcccaccaagaaaagtaggtacatc |
25264483 |
T |
|
| Q |
501 |
gtgatggtgtatagtccagtgcaaccattcgctcactttgtcatcattcgcatcaccaacctttg |
565 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
25264482 |
gtgatggtgtatagtccagtgcaaccatgcgctcactttgtcgtcattcgcatcaccaacctttg |
25264418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University