View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_high_6 (Length: 558)
Name: NF17082_high_6
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 549
Target Start/End: Original strand, 45551167 - 45551702
Alignment:
| Q |
14 |
cacttttgacatcttcactgtcataaactgtacaacatccaaagacataattaaaaagtttcataactcttttgatattgatattgaaacaaaatttgtg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45551167 |
cacttttgacatcttcactgtcataaactgtacaacatccaaacacataattaaaaagtttcataactcttttgatattgatattgaaacaaaatttgtg |
45551266 |
T |
|
| Q |
114 |
aaatttnnnnnnnnnnng----------tatctaaaacctatttagtactgacattttagattgaagatgtgcctggtgtgtgacacagacacgacaccg |
203 |
Q |
| |
|
|||||| | |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45551267 |
aaatttaaaaaaaaaaagagaaaataagtatctaaaacctatgtagtactgacattttagattgaagatgtgtctggtgtgtgacacagacacgacaccg |
45551366 |
T |
|
| Q |
204 |
agtgacatactattaggttcactttcttccattctcaaattattaccagtgtcaatgttgtttgtgtcagtgattcatagtctgaaactaaatgtcaatt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| |||||||||||| ||||| |
|
|
| T |
45551367 |
agtgacatactattaggttcactttcttccattctcaaattattactagtgtcaatgttgtttgt----------catagtatgaaactaaatgccaatt |
45551456 |
T |
|
| Q |
304 |
ttacttcacaagaaaacatggaatgtaccggtagtcccttgaattctagcataatctaattgcaaataatgtagaaaagaacatacttggtgcttgatga |
403 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45551457 |
ttacttcacaagaaaacatggaatgcgccggtagtcccttgaattctagcataatctaattgcaaataatgtagaaaagaacatacttggtgcttgatga |
45551556 |
T |
|
| Q |
404 |
tcttgtgggtcttgaaccagttgcttatcctcatccaagtcgatatcatcaggagtatgctgaatttcattgttatgtccattaccatgatcaagtactt |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45551557 |
tcttgtgggtcttgaaccagttgcttatcctcatccaagtcgatatcatcatgagtatgctgaatttcattgttatgtccattaccatgatcaagtactt |
45551656 |
T |
|
| Q |
504 |
gttgaccatgttttttaattgtgtccttaattttcttagcctttgc |
549 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45551657 |
gttgaccgtgttttttaattgtgtccttaattttcttagcctttgc |
45551702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 268 - 549
Target Start/End: Original strand, 45546176 - 45546463
Alignment:
| Q |
268 |
tgtcagtgattcatagtctgaaactaaatgtca-attttacttcacaagaaaacatggaatgtaccggtagtcccttgaattctagcataatctaattgc |
366 |
Q |
| |
|
||||| ||||| ||||||| |||| || || || ||| |||||||||||| || |||| |||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
45546176 |
tgtcaatgatttatagtctaaaaccaagtgccagattctacttcacaagagaatatgggatgtactagtagtcccttgaattctatcataatctaattgc |
45546275 |
T |
|
| Q |
367 |
--aaataatgtagaaaagaacatacttggtgcttgatgatcttgtgggtcttgaaccagttgcttatcctcatccaagt--cgat-atcatcaggagtat |
461 |
Q |
| |
|
||| |||||||||||||||||||||||| ||| | ||| || | |||||||||| | | | |||||||||||||||| | || |||||||||| ||| |
|
|
| T |
45546276 |
ataaagaatgtagaaaagaacatacttggtacttcacgatttttttggtcttgaactattggtttatcctcatccaagtcaccatcatcatcaggaatat |
45546375 |
T |
|
| Q |
462 |
gctgaatttcattgttatgtccattaccatgatcaagtacttgttgaccatgttttttaattgtgtccttaattttcttagcctttgc |
549 |
Q |
| |
|
||||| ||||| ||| ||||||| |||||||||||| ||| | |||||||| || ||||| ||||| ||| |||| |||||||||| |
|
|
| T |
45546376 |
gctgagtttcagtgtcatgtccactaccatgatcaaatacattctgaccatgcttcttaatactgtccctaactttcctagcctttgc |
45546463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 56
Target Start/End: Original strand, 45545936 - 45545970
Alignment:
| Q |
22 |
acatcttcactgtcataaactgtacaacatccaaa |
56 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |
|
|
| T |
45545936 |
acatcttcactgtcataatctgtacaacatccaaa |
45545970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 506 - 549
Target Start/End: Original strand, 16205626 - 16205669
Alignment:
| Q |
506 |
tgaccatgttttttaattgtgtccttaattttcttagcctttgc |
549 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||||||||||| |
|
|
| T |
16205626 |
tgaccatgctttgtgattgtgtccttaattttcttagcctttgc |
16205669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University