View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_60 (Length: 247)
Name: NF17082_high_60
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 27563147 - 27562974
Alignment:
| Q |
1 |
ttacaatgaattcaactactcaagaagctcctatgtgttctttatttacagaatatgcttgctataagaaaaacaaagtttgtgttctgataaatttcaa |
100 |
Q |
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| T |
27563147 |
ttacaatgaatttaactactcaagaagctcccatgtgttctttatttacagaatatgcttgctataagaaaaacaaagtttgtgttctgataaatttcaa |
27563048 |
T |
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| Q |
101 |
agtactaatgaaacacacgattgccagcaagggaatagcaagagcattttccgacgactgatgcgaaagataat |
174 |
Q |
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| T |
27563047 |
agtactaatgaaacacacgattgccagcaagggaagagcaagagcattttccgacgactgatgcgaaagataat |
27562974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 168 - 232
Target Start/End: Complemental strand, 27560628 - 27560564
Alignment:
| Q |
168 |
agataatatagccaataacaatgacttagtattgagttttgcatctttgaattttctattgagtt |
232 |
Q |
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| T |
27560628 |
agataatatagccaataacaatgacttagtattgagttttgcatctttgaattttctattgagtt |
27560564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 3 - 91
Target Start/End: Original strand, 27586035 - 27586123
Alignment:
| Q |
3 |
acaatgaattcaactactcaagaagctcctatgtgttctttatttacagaatatgcttgctataagaaaaacaaagtttgtgttctgat |
91 |
Q |
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|||||||||||||| || |||| || ||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
27586035 |
acaatgaattcaaccacccaagcagatcctatgtgttttttatttacaaaatatgcttgctataagaaaaacaaagtttgtgttctgat |
27586123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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