View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_high_7 (Length: 547)
Name: NF17082_high_7
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 502; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 20 - 541
Target Start/End: Complemental strand, 47920499 - 47919979
Alignment:
| Q |
20 |
tacttaaacccaatacaataagtcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatatttcctacttttttcttt |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47920499 |
tacttaaacccaatacaataagtcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatatt-cctacttttttcttt |
47920401 |
T |
|
| Q |
120 |
ctctattaaggaatcaagagtcaagaccatggcatcagcttaattctatcaaccatttcggtgatcttcactactttcccattataatgtcattgctttc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47920400 |
ctctattaaggaatcaagagtcaagaccatggcatcagcttaattctatcaaccatttccgtgatcttcactactttcccattataatgtcattgctttc |
47920301 |
T |
|
| Q |
220 |
caaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47920300 |
caaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatc |
47920201 |
T |
|
| Q |
320 |
aattcgtctccctacttcgttgtgttcccatccaagtactgagcagcttgcagtaaatgattggcagttacgatttttctaaaacacaatacacaacatt |
419 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47920200 |
aatttgtctccctacttcgttgtgttcccatccaagtactgagcagcttgcagtaaatgattggcagttacgatttttctaaaacacaatacacaacatt |
47920101 |
T |
|
| Q |
420 |
gttggtgcatatcttgaattattttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccgaacattattattttagatggtactgt |
519 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47920100 |
gttggtgcatatcttgaattattttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccgaacattattattttagatggtactgt |
47920001 |
T |
|
| Q |
520 |
agttttccacatcctatgcttc |
541 |
Q |
| |
|
||||||||||||||| |||||| |
|
|
| T |
47920000 |
agttttccacatcctctgcttc |
47919979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 401 - 541
Target Start/End: Complemental strand, 47926376 - 47926234
Alignment:
| Q |
401 |
aaacacaatacacaacattgttggtgcatatcttgaatta------ttttccataatttcagccgagttgataatttgtcttgaagtaatcttcatccga |
494 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||||| ||||||||| |||| || |
|
|
| T |
47926376 |
aaacacaatacacaacattgttagtgcatatcttgaattacacatcttttccatactttcacccgagtttataatctgtcttcaagtaatctccatctga |
47926277 |
T |
|
| Q |
495 |
acattattattttagatggtactgtagttttccacatcctatgcttc |
541 |
Q |
| |
|
| ||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
47926276 |
a----attattttagatggtactgtagttttccagatcctctgcttc |
47926234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 42 - 104
Target Start/End: Complemental strand, 47926528 - 47926466
Alignment:
| Q |
42 |
tcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatattt |
104 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
47926528 |
tcagattaaatacattgaaagcaggaaagtggattgatccaccaattagagtaaacaatattt |
47926466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 589221 - 589304
Alignment:
| Q |
19 |
atacttaaacccaatacaataagtcagattaaatacatagaaagcaagaaagtggattaatccaccaattagagtaaacaatatt |
103 |
Q |
| |
|
||||| ||| ||||||||| || |||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
589221 |
atactcaaatccaatacaa-aattcagatcgaatacattgaaagcaagaaagtggattagtccaccaattagagaaaacaatatt |
589304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 589444 - 589522
Alignment:
| Q |
244 |
tagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaatcaat |
322 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| || |||||||| ||||||| ||| |||||||| ||||||| |||| |
|
|
| T |
589444 |
tagtcaaattagatgagacaccttcctaccattttttcctttacaaacctcatgaaagagtagaaagttatcaaccaat |
589522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 484
Target Start/End: Original strand, 589623 - 589722
Alignment:
| Q |
390 |
cgatttttctaaaacacaatacacaacattgttggtgcatatcttgaatta------ttttccataatttcagccgagttgataatttgtcttgaagtaa |
483 |
Q |
| |
|
|||||| |||||| || ||||||||| |||||||||||| ||||||||||| |||||||||||| || |||||||| ||| ||||||||||||| |
|
|
| T |
589623 |
cgatttctctaaagcaaaatacacaatattgttggtgcacatcttgaattacacctcttttccataattccacccgagttggtaa-ctgtcttgaagtaa |
589721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 63 - 103
Target Start/End: Complemental strand, 44350496 - 44350456
Alignment:
| Q |
63 |
caagaaagtggattaatccaccaattagagtaaacaatatt |
103 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44350496 |
caagaaggtggattaatccaccaattagagtaaacaatatt |
44350456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 24888704 - 24888656
Alignment:
| Q |
39 |
aagtcagattaaatacatagaaagcaagaaagtggattaatccaccaat |
87 |
Q |
| |
|
|||| |||| |||||||| ||||||||||||||||||| ||||| |||| |
|
|
| T |
24888704 |
aagttagatcaaatacattgaaagcaagaaagtggattcatccatcaat |
24888656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 218 - 343
Target Start/End: Original strand, 13957700 - 13957825
Alignment:
| Q |
218 |
tccaaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagtagaaaattatcaa |
317 |
Q |
| |
|
|||| ||||||||||||| | | || ||| |||| ||||||||||| |||||| ||||||||||||| || ||||| || || | || |||||| |||| |
|
|
| T |
13957700 |
tccatccaaatgcaccacactgtagctagccaaaacagatgagacaccttcctaccattcttccctttgcaaacctctttgaagaataaaaaattgtcaa |
13957799 |
T |
|
| Q |
318 |
tcaattcgtctccctacttcgttgtg |
343 |
Q |
| |
|
|||||| |||| | || |||||||| |
|
|
| T |
13957800 |
ccaattcatctctccacctcgttgtg |
13957825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 331
Target Start/End: Complemental strand, 9936499 - 9936373
Alignment:
| Q |
205 |
aatgtcattgctttccaaccaaatgcaccacgccggagatagtcaaattagatgagacactttcctaacattcttccctttacatacctcattaaaaagt |
304 |
Q |
| |
|
||||||||| | |||||||| |||||||| | || || || |||||||||||||||| || ||| || |||| ||||| || ||||| ||||| ||| |
|
|
| T |
9936499 |
aatgtcattacgctccaaccatatgcaccatgtcgtagctaaccaaattagatgagacaactttctatcagtctttccttttcaaacctctttaaagagt |
9936400 |
T |
|
| Q |
305 |
agaaaattatcaatcaattcgtctccc |
331 |
Q |
| |
|
||||||| ||| | |||||| |||||| |
|
|
| T |
9936399 |
agaaaatcatcgaccaattcatctccc |
9936373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University