View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_74 (Length: 206)
Name: NF17082_high_74
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_74 |
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Alignment Details
Target: chr3 (Bit Score: 156; Significance: 4e-83; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 156; E-Value: 4e-83
Query Start/End: Original strand, 15 - 186
Target Start/End: Original strand, 11495801 - 11495972
Alignment:
| Q |
15 |
agagagggagcatcaattggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggata |
114 |
Q |
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| T |
11495801 |
agagagggagcatcaattggctgataacatgtgagaatggaattatcattatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggata |
11495900 |
T |
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| Q |
115 |
tcctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcctctcagtttcgggcacttact |
186 |
Q |
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| T |
11495901 |
tcctcttaactcaagttcagttaaggaaggaagattgtcaggtatgtctcctctcagtttcgggcacttact |
11495972 |
T |
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Target: chr1 (Bit Score: 121; Significance: 3e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 3e-62
Query Start/End: Original strand, 15 - 183
Target Start/End: Complemental strand, 17313667 - 17313499
Alignment:
| Q |
15 |
agagagggagcatcaattggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggata |
114 |
Q |
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| T |
17313667 |
agagagggagcatcagttggctgattacatgagagaacggaattatagttatgaaattgctattatcatctgaatgtcttgactccaccagcaaaggata |
17313568 |
T |
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| Q |
115 |
tcctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcctctcagtttcgggcactt |
183 |
Q |
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| T |
17313567 |
tcctcttaactcaagttcagttaaggaaggaagtttgtcaggtatgtctcctctcagtttcgggcactt |
17313499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 120 - 186
Target Start/End: Complemental strand, 18389847 - 18389778
Alignment:
| Q |
120 |
ttaactcaagttcagttaag---gaaggaagttggtcaggtatgtctcctctcagtttcgggcacttact |
186 |
Q |
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| T |
18389847 |
ttaactcaagtttagttaagcaggaaggaagtttgtcaggtatatttcctctcagtttcgggcacttact |
18389778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 5990352 - 5990280
Alignment:
| Q |
117 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgt---ctcctctcagtttcgggcacttact |
186 |
Q |
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|||||||||||||||||||||||||||||| | ||||| |||| || |||||||||||||||||||||| |
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| T |
5990352 |
ctcttaactcaagttcagttaaggaaggaaacttgtcagcaatgtttcctactctcagtttcgggcacttact |
5990280 |
T |
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