View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_high_9 (Length: 502)
Name: NF17082_high_9
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 36240409 - 36240187
Alignment:
| Q |
10 |
aagaatattagtgtaatatattgtatgtggaagcctctttatgtacgagaagtttatgttttgcagtctcatgtcggcgtgatgtggttgaagttgctac |
109 |
Q |
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| T |
36240409 |
aagaatattagtgtaatatattgtatgtggaagcctctttatatacgagaagtttatgttttgcagtctcatgtcggcgtgatgtggttgaagttgctac |
36240310 |
T |
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| Q |
110 |
tgccatgcacttatgttaaagacactaacgagaatgcaccaatcaagacagacttgatttttcttctcatacaacattcaagcaaggaggataggaaagg |
209 |
Q |
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| T |
36240309 |
tgccatgcacttatgttaaagacactaacgagaatgcaccaatcaagacagacttgatttttcttctcatacaacattcaagcaaggaggataggaaagg |
36240210 |
T |
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| Q |
210 |
taatagttgacatttaccttctc |
232 |
Q |
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| T |
36240209 |
taatagttgacatttaccttctc |
36240187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 294 - 487
Target Start/End: Complemental strand, 36240125 - 36239932
Alignment:
| Q |
294 |
aaactgcaagtcctatttcacatttttatatgacaactcnnnnnnnaaaaattatacttgactaataannnnnnnaaactttacatttaggagactattg |
393 |
Q |
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| T |
36240125 |
aaactgcaagtcctatttcacatttttatatgacaactctttttttaaaaattatacttgactaataatttttttaaactttacatttaggagactattg |
36240026 |
T |
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| Q |
394 |
aaggtgattcaaacaataaggatgatgtgattgggactaattcaggttagaattcaactagcaagtcatcgtggaagaaacatactatgataat |
487 |
Q |
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| T |
36240025 |
aaggtgattcaaacaataaggatgatgtgattgggactaattcaggttagaattcaactagcaagtcattgtggaagaaacatactatgataat |
36239932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 70 - 232
Target Start/End: Complemental strand, 2234355 - 2234195
Alignment:
| Q |
70 |
ttgcagtctcatgtcggcgtgatgtggttgaagttgctactgccatgcacttatgtt---aaagacactaacgagaatgcaccaatcaagacagacttga |
166 |
Q |
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|||||| |||||||||| | ||||||||||||| |||||| |||||||||||||| ||||||| | ||||||||| ||||||||| || ||||| |
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| T |
2234355 |
ttgcaggctcatgtcggagcgatgtggttgaagctgctaccatcatgcacttatgttgttaaagacagagaagagaatgcagcaatcaagataggcttga |
2234256 |
T |
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| Q |
167 |
tttttcttctcatacaacattcaagcaaggaggataggaaaggtaatagttgacatttaccttctc |
232 |
Q |
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| T |
2234255 |
tttttcttcacatacaacattcaagtaagg-----aggaaaggtaatagttgtcatttaccttctc |
2234195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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