View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_low_1 (Length: 1029)

Name: NF17082_low_1
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_low_1
NF17082_low_1
[»] chr5 (13 HSPs)
chr5 (9-1029)||(13881088-13882104)
chr5 (324-579)||(16022434-16022693)
chr5 (764-1029)||(13254481-13254759)
chr5 (378-580)||(14389488-14389688)
chr5 (909-1029)||(14367230-14367350)
chr5 (11-110)||(16024464-16024562)
chr5 (11-103)||(13883806-13883897)
chr5 (661-732)||(16022307-16022378)
chr5 (652-730)||(14389758-14389836)
chr5 (748-861)||(14367070-14367184)
chr5 (749-826)||(13878561-13878638)
chr5 (649-693)||(13856744-13856788)
chr5 (882-931)||(13139649-13139698)
[»] chr3 (1 HSPs)
chr3 (446-526)||(48707228-48707308)
[»] chr8 (2 HSPs)
chr8 (444-576)||(26200039-26200174)
chr8 (444-576)||(29623198-29623333)


Alignment Details
Target: chr5 (Bit Score: 840; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 840; E-Value: 0
Query Start/End: Original strand, 9 - 1029
Target Start/End: Complemental strand, 13882104 - 13881088
Alignment:
Q  9 gcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  13882104 gcagaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggataatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaa 13882005  T
Q  109 cgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattggttttctctgtagtttca 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13882004 cgtgaagccattggcaaagcatgtaccccatttatgttcttactagacattcactcccttctgactttcaaaaccttaattggttttctctgtagtttca 13881905  T
Q  209 a-------gttgtataattagtgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattatacccttata 301  Q
    |       |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881904 actttcaagttgtataattattgtataattagcacagttacctttcattcagtatgattgtactctactaaaattataatgtctaaattatacccttata 13881805  T
Q  302 taaacttgggaaagatgatacgtaaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggtaccattcattctttctga 401  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881804 taaacttgggaaagatgatacataaacttgttaaacaggttaaattgttaaagccataagttcctctttttatgacattggtaccattcattctttctga 13881705  T
Q  402 cacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaac 501  Q
    |||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||    
T  13881704 cacttaatgtatgtacttctatttcagcttcaagatgctgtgactgatgagatggatattaagcttcttcaactatatgcatatgaaaa-tcaataaaac 13881606  T
Q  502 ttgaaaagtttgtcgatatagtttaccacataaatgctcgtgttctacacgattagaacatatatcgtattgaatatgcttgaatatgcaagnnnnnnnn 601  Q
    |||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||||||||||||          |||||||||            
T  13881605 ttgaaaagtttgtcgatatagtttaccacgaaaatgcttgtgttctacacgattagaacatatatcgtattga----------atatgcaagttttcttt 13881516  T
Q  602 nnnnnnnnncatttgaagtttgactcttgcctatttaaatatgctcctggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagt 701  Q
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881515 tccttttttcatttgaagtttgactcttgcctatttaaatatgctcctggagttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagt 13881416  T
Q  702 gtcctaaaccaaagacgctgtctattcaacttgtgttactgaacaaacatgttaacctatgggtggaatagtcgtttagattgactatcattggattgca 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13881415 gtcctaaaccaaagacgctgtctattcaacttgtgttactgaacaaacatgttaacctattggtggaatagtcgtttagattgactatcattggattgca 13881316  T
Q  802 gaaagttaagatattggaagcagatggtctcatcctatcataaaatcagcttgtgttactaaatttatgatagtattgcgtttaatcactttagacttta 901  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13881315 gaaagttaagatattggaagcagatggtctcatcctatcataaaaccagcttgtgttactaaatttatgatagtattgcgtttaatcactttagacttta 13881216  T
Q  902 atcaatattaatcggatagcttacgttttacattttcccttcttacattcaacatcttcttactttccatgcacagggaatccagaaactacattcccat 1001  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  13881215 atcaatattaatcggatagcttacgttttacgttttcccttcttacattcaacattttcttactttccatgcacagggaatccagaaactacattcacat 13881116  T
Q  1002 acttctggataacagcctcctgcccctt 1029  Q
    ||||||||||||||| ||| ||||||||    
T  13881115 acttctggataacagactcatgcccctt 13881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 324 - 579
Target Start/End: Complemental strand, 16022693 - 16022434
Alignment:
Q  324 taaacttgttaaacaggttaaattgttaaagccataag-ttcctctttttatgacattggtaccattcattctttctgacacttaatgcgtgtacttcta 422  Q
    |||||||||||||||||||||||   |||||||||||  ||||||||||||| |  ||| |  ||||||||||||||||| ||| |    |||||| |||    
T  16022693 taaacttgttaaacaggttaaatgcataaagccataaaattcctctttttataagcttgatgtcattcattctttctgacccttcaattatgtactccta 16022594  T
Q  423 tttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatag 522  Q
    ||||||||||||| || || || ||||||||||||||||||||| | |||||||||||||||||| ||||||| ||||| || |||||||||||||||||    
T  16022593 tttcagcttcaagctgttgcgagtgatgagatggataataagctgcttcaactatatgcatatgagaaatcaagaaaacctggaaagtttgtcgatatag 16022494  T
Q  523 tttaccacataaatgctcgtg---ttctacacgattagaacatatatcgtattgaatatg 579  Q
    |||| |||  |||||||||||   |||| || ||| ||||||||||||||||||||||||    
T  16022493 tttatcacgaaaatgctcgtgttcttcttcatgatgagaacatatatcgtattgaatatg 16022434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 764 - 1029
Target Start/End: Complemental strand, 13254759 - 13254481
Alignment:
Q  764 gtggaatagtcgtttagattgactatcattggattgcagaaagttaagatattggaagcagatggtctcatcctatcataaaatcagcttgtgttactaa 863  Q
    ||||||||||| ||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||  ||  ||||||   |||||||||||| |    
T  13254759 gtggaatagtcatttaggtcgactatcattggattgcagaaagttcagatattggaagcagatggtctcattttacgataaaacatgcttgtgttactga 13254660  T
Q  864 attt------------at-gatagtattgcgtttaatcactttagactttaatcaatattaatcggatagcttacgttttacattttcccttcttacatt 950  Q
    || |            || ||||| ||||| ||||||||||||  ||| ||||| |||||||||||||||||||||||||||  | ||||||||||||||    
T  13254659 atcttacctgcaaaatatagatagcattgcttttaatcacttttaactctaatcgatattaatcggatagcttacgttttacgctctcccttcttacatt 13254560  T
Q  951 caacatcttcttactttccatgcacagggaatccagaaactacattcccatacttctggataacagcctcctgcccctt 1029  Q
    ||| || |||  ||||||||||||| | ||||||||||||| ||||| |||||||||||||||||| ||| ||||||||    
T  13254559 caatattttccgactttccatgcacggagaatccagaaactgcattcacatacttctggataacagactcatgcccctt 13254481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 68; E-Value: 8e-30
Query Start/End: Original strand, 378 - 580
Target Start/End: Original strand, 14389488 - 14389688
Alignment:
Q  378 attggtaccattcattctttctgacacttaatgcgtgtacttctatttcagcttcaagatgctgtgactgatgagatggataataagcttcctcaactat 477  Q
    |||||||||||| ||| ||||||||||| || |  ||||||  ||||  ||||||| | || || || || || ||||||||||||||||| ||||||||    
T  14389488 attggtaccattaattttttctgacactgaaagtatgtactcttatt--agcttcacgctgttgcgagtggtgggatggataataagcttcttcaactat 14389585  T
Q  478 atgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgctcgtgttctacacgattagaacatatatcgtattgaata 577  Q
    |||||| ||| ||||||| ||| |||| ||||||||| ||||||||||| |||  |||| |||||||||| || ||| ||||||||||  ||||||||||    
T  14389586 atgcatttgacaaatcaagaaagcttggaaagtttgttgatatagtttatcacgaaaattctcgtgttcttcatgatgagaacatatactgtattgaata 14389685  T
Q  578 tgc 580  Q
    |||    
T  14389686 tgc 14389688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 909 - 1029
Target Start/End: Original strand, 14367230 - 14367350
Alignment:
Q  909 ttaatcggatagcttacgttttacattttcccttcttacattcaacatcttcttactttccatgcacagggaatccagaaactacattcccatacttctg 1008  Q
    |||||||||||||||||  |||||  | ||||||||||||||||| |  |||| ||||||||||||||||||||||||| ||| | ||| ||||||||||    
T  14367230 ttaatcggatagcttacagtttacgctatcccttcttacattcaataatttctgactttccatgcacagggaatccagagactgcgttctcatacttctg 14367329  T
Q  1009 gataacagcctcctgcccctt 1029  Q
    |||||||| ||| ||||||||    
T  14367330 gataacagactcatgcccctt 14367350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 11 - 110
Target Start/End: Complemental strand, 16024562 - 16024464
Alignment:
Q  11 agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccattttctaaacg 110  Q
    |||||||||| |||||||||||||||||||||||||||| |  ||||| |||||| ||||| ||||||||||||||||| ||||| ||||||||| ||||    
T  16024562 agaacatgatgataaggctgaaagtgaaggtgaagctgaag-gaatggctgatgcacatgatgttgaaggagatggaacatcattaccattttctgaacg 16024464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 11 - 103
Target Start/End: Complemental strand, 13883897 - 13883806
Alignment:
Q  11 agaacatgataataaggctgaaagtgaaggtgaagctgatgaaaatggatgatgcgcatgaagttgaaggagatggaacgtcattgccatttt 103  Q
    |||||||||||||||||||||||||| |||||||||||| |   |||| |||||||||||| ||||||| |||||||| || |||||||||||    
T  13883897 agaacatgataataaggctgaaagtggaggtgaagctgaag-cgatggctgatgcgcatgatgttgaagaagatggaaagttattgccatttt 13883806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 661 - 732
Target Start/End: Complemental strand, 16022378 - 16022307
Alignment:
Q  661 tagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaact 732  Q
    |||||||||||||| |||||||||||||||||| | |||||  || ||||||||||| ||||||||||||||    
T  16022378 tagtgttatatgttctgtaacatggtttatttcattgcagtcaccaaaaccaaagacactgtctattcaact 16022307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 652 - 730
Target Start/End: Original strand, 14389758 - 14389836
Alignment:
Q  652 agttttaagtagtgttatatgttttgtaacatggtttatttcctcgcagtgtcctaaaccaaagacgctgtctattcaa 730  Q
    ||||||||| |||||||||||||||||||||||||||||||  | |||||  || ||||||||||| || |||||||||    
T  14389758 agttttaaggagtgttatatgttttgtaacatggtttattttattgcagtcaccaaaaccaaagacactttctattcaa 14389836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 748 - 861
Target Start/End: Original strand, 14367070 - 14367184
Alignment:
Q  748 acatgttaacctatgggtggaatagtcgtttagattgactatcatt-ggattgcagaaagttaagatattggaagcagatggtctcatcctatcataaaa 846  Q
    |||||||||||| || |||||||||   |||||||||| ||  ||| || || ||| ||||| ||||||||| ||||||||||||||| |||  ||||||    
T  14367070 acatgttaacctgtgagtggaataggaatttagattgattactatttggtttacagcaagttcagatattgggagcagatggtctcattctaatataaaa 14367169  T
Q  847 tcagcttgtgttact 861  Q
     ||||||||||||||    
T  14367170 ccagcttgtgttact 14367184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 749 - 826
Target Start/End: Complemental strand, 13878638 - 13878561
Alignment:
Q  749 catgttaacctatgggtggaatagtcgtttagattgactatcattggattgcagaaagttaagatattggaagcagat 826  Q
    ||||||||||| || || ||||||   | |||||||| ||||||||| |||||| ||||||||||||||| |||||||    
T  13878638 catgttaacctgtgagttgaataggtatatagattgattatcattggtttgcagcaagttaagatattgggagcagat 13878561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 649 - 693
Target Start/End: Complemental strand, 13856788 - 13856744
Alignment:
Q  649 tggagttttaagtagtgttatatgttttgtaacatggtttatttc 693  Q
    |||| ||||||| |||||||||||||| |||||||||||||||||    
T  13856788 tggaattttaaggagtgttatatgtttggtaacatggtttatttc 13856744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 882 - 931
Target Start/End: Complemental strand, 13139698 - 13139649
Alignment:
Q  882 tttaatcactttagactttaatcaatattaatcggatagcttacgtttta 931  Q
    ||||||||||||  ||||||||||||||||||| |||| |||||| ||||    
T  13139698 tttaatcacttttcactttaatcaatattaatcagataacttacggttta 13139649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 446 - 526
Target Start/End: Original strand, 48707228 - 48707308
Alignment:
Q  446 tgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagttta 526  Q
    ||||||||||| ||||||||||| ||||||| |||||||  | ||||||| |||||||| |||| |||| |||||||||||    
T  48707228 tgatgagatggttaataagcttcttcaactaaatgcataccagaaatcaagaaaacttggaaagcttgttgatatagttta 48707308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 444 - 576
Target Start/End: Complemental strand, 26200174 - 26200039
Alignment:
Q  444 actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgctcgtg 543  Q
    ||||||||||||||||| || |||| ||||||||||||||||||| |||||| ||||  || ||  ||| | ||| ||||||| ||   |||||| ||||    
T  26200174 actgatgagatggataacaaacttcttcaactatatgcatatgaacaatcaagaaaatctggaagcttttttgatgtagtttatcatgaaaatgcccgtg 26200075  T
Q  544 ---ttctacacgattagaacatatatcgtattgaat 576  Q
       |||| || ||| |||||||||||||||||||||    
T  26200074 ttcttcttcatgatgagaacatatatcgtattgaat 26200039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 444 - 576
Target Start/End: Complemental strand, 29623333 - 29623198
Alignment:
Q  444 actgatgagatggataataagcttcctcaactatatgcatatgaaaaatcaataaaacttgaaaagtttgtcgatatagtttaccacataaatgctcgtg 543  Q
    ||||||||||||||||| || |||| |||||||||||||| |||| |||||| ||||  || ||  ||| | ||||||||||| ||   |||||| ||||    
T  29623333 actgatgagatggataacaaacttcttcaactatatgcatgtgaacaatcaagaaaatctggaagcttttttgatatagtttatcatgaaaatgcccgtg 29623234  T
Q  544 ---ttctacacgattagaacatatatcgtattgaat 576  Q
       |||| || ||| |||||||||||||||||||||    
T  29623233 ttcttcttcatgatgagaacatatatcgtattgaat 29623198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University