View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_low_11 (Length: 493)

Name: NF17082_low_11
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_low_11
NF17082_low_11
[»] chr5 (7 HSPs)
chr5 (1-478)||(28873710-28874187)
chr5 (94-409)||(28858466-28858777)
chr5 (1-90)||(28872265-28872354)
chr5 (7-94)||(3031386-3031474)
chr5 (1-86)||(2357755-2357840)
chr5 (418-459)||(28843240-28843281)
chr5 (50-94)||(43095005-43095049)
[»] chr7 (2 HSPs)
chr7 (1-87)||(44968822-44968908)
chr7 (1-94)||(35324114-35324207)
[»] chr6 (3 HSPs)
chr6 (7-84)||(367415-367492)
chr6 (7-93)||(369264-369350)
chr6 (27-93)||(31888330-31888396)
[»] chr2 (7 HSPs)
chr2 (7-94)||(4284981-4285069)
chr2 (1-93)||(5989335-5989427)
chr2 (1-94)||(5983379-5983472)
chr2 (27-94)||(18163795-18163862)
chr2 (23-86)||(45485929-45485992)
chr2 (35-94)||(1645015-1645075)
chr2 (34-94)||(13273210-13273270)
[»] chr3 (3 HSPs)
chr3 (1-93)||(12221746-12221838)
chr3 (23-93)||(4315482-4315552)
chr3 (29-86)||(11171987-11172044)
[»] chr4 (1 HSPs)
chr4 (26-93)||(53008159-53008226)
[»] chr8 (1 HSPs)
chr8 (1-94)||(14685247-14685343)


Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 28873710 - 28874187
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataacactaa 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873710 aacttgagttagttacttcacatgcaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataacactaa 28873809  T
Q  101 agaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaactagaacag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873810 agaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaactagaacag 28873909  T
Q  201 tccttgatcaaactctacttacctctcagtcaaaattcagattatcatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaacacaggt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28873910 tccttgatcaaactctacttacctctcagtcaaaattcagattaccatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaacacaggt 28874009  T
Q  301 tgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgccttctt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874010 tgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtgccttctt 28874109  T
Q  401 aaatattatgtttagatttatagatgtgtgtcaatattatgtttagatttataaaagagacagttgatacacaacatt 478  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28874110 aaatattatgtttagatttatagatgtgtgtcaatattatgtttagatttataaaagagacagttgatacacaacatt 28874187  T

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Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 94 - 409
Target Start/End: Original strand, 28858466 - 28858777
Alignment:
Q  94 acactaaagaacatcaatgtaaatcgatcaacacatcaagtggttaatgaacttcaaataaggttgattcaaccgtaagtacttgaatttgactttaact 193  Q
    |||||||| ||||| ||||||||||    || ||||||  |||||||||||||||| ||||||||||||||||||||||||||||||||  ||||| |||    
T  28858466 acactaaacaacattaatgtaaatc----aagacatcagatggttaatgaacttcagataaggttgattcaaccgtaagtacttgaattcaactttgact 28858561  T
Q  194 agaacagtccttgatcaaactctacttacctctcagtcaaaattcagattatcatagccctttctcctaggaaatagaaggtttagaaaaataaaaagaa 293  Q
     ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||||||||||||||     
T  28858562 ggaacaatccttgatcaaactttacttacctctcagtcaaaattcagattatcacagccctttctcctaggaaacggaaggtttagaaaaataaaaagag 28858661  T
Q  294 cacaggttgcagaagagccaaggcgctaaacccaagctctgcgcattaatgctcatttcaaatttgagcatattgttccataactaatgttctctatgtg 393  Q
    |||||| ||||||||||||||||||| ||| ||||||  | | |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||    
T  28858662 cacaggctgcagaagagccaaggcgccaaatccaagccttacacattaatgctcattccaaatttgagcattttgttccataactaatgctctctatgtg 28858761  T
Q  394 ccttcttaaatattat 409  Q
    ||||||||||||||||    
T  28858762 ccttcttaaatattat 28858777  T

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Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 28872265 - 28872354
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatcca 90  Q
    |||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||    
T  28872265 aacttgagttagttacttcacatgcaagtttctaaacaaactgttaaacaaagataagactaattctaaataaaatgaattactaatcca 28872354  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 3031474 - 3031386
Alignment:
Q  7 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaa-aatgaattactaatccaataa 94  Q
    |||||||||||||||||| |||| ||||||||||||  ||| ||||||||| ||||||||||||||| ||||||||||| | |||||||    
T  3031474 agttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaattctaactaataatgaattacttaaccaataa 3031386  T

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Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 2357755 - 2357840
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaa 86  Q
    ||||||||||||||||||||  || ||||||||||| ||||| |||| ||||||||| |||||  |||||| || |||| ||||||    
T  2357755 aacttgagttagttacttcaagtgcaagtttctaaataaactactaatcaaagataaaactaaaactaactgaactgaactactaa 2357840  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 418 - 459
Target Start/End: Original strand, 28843240 - 28843281
Alignment:
Q  418 ttatagatgtgtgtcaatattatgtttagatttataaaagag 459  Q
    |||||||||||| | |||||||||||||||||||||||||||    
T  28843240 ttatagatgtgttttaatattatgtttagatttataaaagag 28843281  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 43095049 - 43095005
Alignment:
Q  50 aaagataagactaattctaactaaaatgaattactaatccaataa 94  Q
    ||||| || |||||||||||||||| ||||||||||| |||||||    
T  43095049 aaagacaaaactaattctaactaaactgaattactaaaccaataa 43095005  T

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Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 44968822 - 44968908
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaat 87  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  44968822 aacttgagttagttacttcacatgcaagtttctaaacaaactactaaacaaagataagactaattctaactaaaatgaattaataat 44968908  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 35324114 - 35324207
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 94  Q
    ||||||||||||||||||||  || ||||||||||||||||| |||| |||||||||  ||||   |||||||| |||| |||||| |||||||    
T  35324114 aacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaagataaagctaaaattaactaaactgaaatactaaaccaataa 35324207  T

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Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 7 - 84
Target Start/End: Original strand, 367415 - 367492
Alignment:
Q  7 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattact 84  Q
    |||||||||||||||||| |||||||||||||||||  ||| ||||||||| ||||||||||||||||||||||||||    
T  367415 agttagttacttcacatgcaagtttctaaacaaactattaagcaaagataaaactaattctaactaaaatgaattact 367492  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 369264 - 369350
Alignment:
Q  7 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 93  Q
    |||||||||||||||||| ||||||||||||| |||  ||| ||||||||| |||||||||||||||||||||||||| | ||||||    
T  369264 agttagttacttcacatgcaagtttctaaacagactattaagcaaagataaaactaattctaactaaaatgaattacttaaccaata 369350  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 93
Target Start/End: Complemental strand, 31888396 - 31888330
Alignment:
Q  27 agtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 93  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  31888396 agtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaata 31888330  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 7 - 94
Target Start/End: Complemental strand, 4285069 - 4284981
Alignment:
Q  7 agttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaa-aatgaattactaatccaataa 94  Q
    |||||||||||||||||| |||| ||||||||||||  ||| ||||||||| |||||||||||| || ||||||||||| | |||||||    
T  4285069 agttagttacttcacatgcaagtatctaaacaaactattaagcaaagataaaactaattctaaccaataatgaattacttaaccaataa 4284981  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 5989427 - 5989335
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 93  Q
    ||||||||||||||||||||  || ||||||||||||||||| ||||  ||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  5989427 aacttgagttagttacttcaagtgcaagtttctaaacaaactactaattaaagataaagctaaaactaactaaactgaattactaaaccaata 5989335  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 5983472 - 5983379
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 94  Q
    ||||||| ||||||||||||  || ||||||||||||||||| |||| |||| ||||  ||||  ||||||||| ||||||||||| |||||||    
T  5983472 aacttgatttagttacttcaagtgcaagtttctaaacaaactactaatcaaaaataaagctaaaactaactaaactgaattactaaaccaataa 5983379  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 94
Target Start/End: Complemental strand, 18163862 - 18163795
Alignment:
Q  27 agtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 94  Q
    |||||| ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| |||||||    
T  18163862 agtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaataa 18163795  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 86
Target Start/End: Original strand, 45485929 - 45485992
Alignment:
Q  23 tgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaa 86  Q
    |||||||||| ||||||||| |||| |||||||||  ||||  ||||||||| |||||||||||    
T  45485929 tgtaagtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaa 45485992  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 1645075 - 1645015
Alignment:
Q  35 aacaaactgctaaacaaagataaga-ctaattctaactaaaatgaattactaatccaataa 94  Q
    ||||||||  ||| ||||||||| | ||||||||||||||||||||||||| | |||||||    
T  1645075 aacaaactattaagcaaagataaaaactaattctaactaaaatgaattacttaaccaataa 1645015  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Complemental strand, 13273270 - 13273210
Alignment:
Q  34 aaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaataa 94  Q
    ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| |||||||    
T  13273270 aaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaataa 13273210  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 12221746 - 12221838
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 93  Q
    ||||||||||||||||||||  || ||| |  |  ||||||| |||| ||||||||| |||||||| ||||||||||||||||||| ||||||    
T  12221746 aacttgagttagttacttcatgtgcaagctattttacaaactactaaccaaagataaaactaattccaactaaaatgaattactaaaccaata 12221838  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 4315552 - 4315482
Alignment:
Q  23 tgtaagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 93  Q
    |||||||||| ||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  4315552 tgtaagtttccaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaata 4315482  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 11172044 - 11171987
Alignment:
Q  29 tttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaa 86  Q
    |||||||||||||| |||| |||||||||  ||||  ||||||||| |||||||||||    
T  11172044 tttctaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaa 11171987  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 93
Target Start/End: Complemental strand, 53008226 - 53008159
Alignment:
Q  26 aagtttctaaacaaactgctaaacaaagataagactaattctaactaaaatgaattactaatccaata 93  Q
    ||||||||||||||||| |||| |||||||||  ||||  ||||||||| ||||||||||| ||||||    
T  53008226 aagtttctaaacaaactactaatcaaagataaagctaaaactaactaaactgaattactaaaccaata 53008159  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 14685343 - 14685247
Alignment:
Q  1 aacttgagttagttacttcacatgtaagtttctaaacaaactgctaaacaa---agataagactaattctaactaaaatgaattactaatccaataa 94  Q
    ||||||||||||||||||||  || ||||||||||||||||| |||| |||   | |||  |||||  ||||||||| ||||||||||| |||||||    
T  14685343 aacttgagttagttacttcaagtgcaagtttctaaacaaactactaatcaaattatatagaactaaaactaactaaactgaattactaaaccaataa 14685247  T

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