View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_12 (Length: 457)
Name: NF17082_low_12
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 2019502 - 2019047
Alignment:
| Q |
1 |
agcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatcaattaaataatcaatgatccatataattgaaacccaagtta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019502 |
agcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatcaattaaataatcaatgatccatataattgaaacccaagtta |
2019403 |
T |
|
| Q |
101 |
tctttgagaaatagatatgaaagagaatatgag-gggaatttgaatattcttcattgatcgtcgtttagtaatgattacaggatgattggtatttatagt |
199 |
Q |
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| T |
2019402 |
tctttgagaaatagatatgaaagagaatatgagagggaatctgaatattcttcattgatcaacgtttagtaatgattacaggatgattggtatttataga |
2019303 |
T |
|
| Q |
200 |
ggtcaaatccctcgaactgatttgattccgttagttagaaatctctcttagactagctagatgtgagagctgttattctacaggctatacacagctacaa |
299 |
Q |
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||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2019302 |
ggtcaaatccctctaactgatttgattcagttagttagaaatctctcttagactaggtagatgtgagagctgttattctacaggctatacacagctacaa |
2019203 |
T |
|
| Q |
300 |
taggctatatttctatactgaaat-caacatagtagcatgcgtaaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtc |
398 |
Q |
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| T |
2019202 |
taggctatatttctatactgcaatacaacatagtagcatgcgtaaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtc |
2019103 |
T |
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| Q |
399 |
gcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaa |
454 |
Q |
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| T |
2019102 |
gcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaagtaa |
2019047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 343 - 451
Target Start/End: Complemental strand, 2035978 - 2035870
Alignment:
| Q |
343 |
accatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccag |
442 |
Q |
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||||||||| | ||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| | | |
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| T |
2035978 |
accatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgtcgcagcagtataaatcttatcttcaaacctttgagcaatcttccg |
2035879 |
T |
|
| Q |
443 |
aagttcaag |
451 |
Q |
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||||||||| |
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| T |
2035878 |
aagttcaag |
2035870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 2022110 - 2021999
Alignment:
| Q |
1 |
agcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatc-aattaaataatcaatgatccatataattgaaacccaagtt |
99 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||| || ||| | | |||||| ||| | |
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| T |
2022110 |
agcattttcgtagatatttttcgtagataatcagactgaaaagaaggaacaccagtatcgagttaaataatcgatgttcaatacagtagaaacctaagct |
2022011 |
T |
|
| Q |
100 |
atctttgagaaa |
111 |
Q |
| |
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|||||||||||| |
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|
| T |
2022010 |
atctttgagaaa |
2021999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 2021778 - 2021683
Alignment:
| Q |
355 |
agtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctccagaagttcaa |
450 |
Q |
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||||||||| |||||||||| ||||||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||| |||| | ||||||||| |
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| T |
2021778 |
agtggaggcagcacaatactcgtaatgaatgtaccttgcttgtcgcagaagtgtaaatcttatcttcaaacctttgagcaatcttctgaagttcaa |
2021683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 341 - 454
Target Start/End: Complemental strand, 1990230 - 1990117
Alignment:
| Q |
341 |
taaccatgaataagagtggaggctgcacaatactggtaatgaatgtacctggcttgtcgcggaagtataaatcttatcttcaaaccgttgagatatctcc |
440 |
Q |
| |
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||||||||||| | ||||||| |||||||||||| ||||||||||||||||||||| ||| |||||| |||||||||||||||| ||||| | || | |
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| T |
1990230 |
taaccatgaatgaaagtggagactgcacaatactcgtaatgaatgtacctggcttgccgcatcagtatagatcttatcttcaaacctttgagcaagcttc |
1990131 |
T |
|
| Q |
441 |
agaagttcaagtaa |
454 |
Q |
| |
|
||||||||||||| |
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|
| T |
1990130 |
cgaagttcaagtaa |
1990117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 3 - 111
Target Start/End: Complemental strand, 1990534 - 1990425
Alignment:
| Q |
3 |
cattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatcaa-ttaaataatcaatgatccatataattgaaacccaagttat |
101 |
Q |
| |
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||||||| ||||||| |||| | |||||||| |||||||||||||||||||||||||| |||||||||| ||| || ||||| | |||||| ||| ||| |
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| T |
1990534 |
cattttcaaagatatttttcgcaaataatcagactgaaaagaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagctat |
1990435 |
T |
|
| Q |
102 |
ctttgagaaa |
111 |
Q |
| |
|
|||||||||| |
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|
| T |
1990434 |
ctttgagaaa |
1990425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 2036231 - 2036138
Alignment:
| Q |
1 |
agcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatc-aattaaataatcaatgatccatataattgaaacc |
93 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||| | |||||||||| ||| || ||||| | |||||| |
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| T |
2036231 |
agcattttcatagatatttttcgtagataatcagactgaaaagaaggaacaccagtatcgagttaaataatcgatgttcaatatagtagaaacc |
2036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 105
Target Start/End: Original strand, 48204659 - 48204741
Alignment:
| Q |
24 |
tagataatcagtctgaaaagaaggaacaccagtatc-aattaaataatcaatgatccatataattgaaacccaagttatcttt |
105 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| | |||||||||| ||| || ||| | | |||||| ||| ||||||| |
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| T |
48204659 |
tagataatcagactgaaaagaaggaacaccagtatcgagttaaataatcgatgttcaatacagtagaaacctaagctatcttt |
48204741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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