View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_low_14 (Length: 435)
Name: NF17082_low_14
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_14 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 6608429 - 6608031
Alignment:
| Q |
19 |
gaacatatatatagatgagtcttgattaatggaagcatagaaatttaagttaaattgatggatcataccttttgcaaat---tagttggttccccattgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6608429 |
gaacatatatatagatgagtcttgattaatggaagcatagaaatttaagttaaattgatggatcataccttttgcaaataattagttggttccccattgt |
6608330 |
T |
|
| Q |
116 |
gttatgaaacaaatannnnnnncaaacgagtgcacaaaaaatgaatttgagtaaaagagatataaattcattgactttggaacttggacctgtatttata |
215 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6608329 |
gttatgaaacaaatatttttttcaaacgagtgcacaaaaaatgaatttgagtaaaaa---------------------ggaacttggacctgtatttata |
6608251 |
T |
|
| Q |
216 |
gtagaggttctacaccgct----------tctgtacaattctagagaagagttcaatggttcaaaatttctgaacaagtacgtactgtgatatttttctc |
305 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6608250 |
gtagaggttctacaccgctacacaccgcttctgtacaattctagagaagagttcaatggttcaaaatttctgaacaagtacgtactgtgatatttttctc |
6608151 |
T |
|
| Q |
306 |
gtgagttaggttagatgtggttgacaatggaagaagataaaatgaaattgaaaaggaccatccgtccgtttgggctattcacgtatgccatgcaaattac |
405 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6608150 |
gtgagttaggttagatgttgttgacaatggaagaagataaaatgaaattgaaaaggaccatccgtccgtttgggctattcacgtatgccatgcaaattac |
6608051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University