View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_28 (Length: 341)
Name: NF17082_low_28
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 329
Target Start/End: Original strand, 50242880 - 50243201
Alignment:
| Q |
8 |
gagcagagagagactccttgctaaaaaaggataccctgatgatgatttcaactataatgattccgctcctaaacgcagttgtttcgatcttgatgctctt |
107 |
Q |
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| T |
50242880 |
gagcagagagagactccttgctaaaaaaggataccctgatgatgatttcaactataatgattccgctcccaaacgcagttgttttgatcttgatgctctt |
50242979 |
T |
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| Q |
108 |
tctgaacgcgttgtcaacatccgcaatgtctttcgtgatttcattggaaaactctacgagatgggtcgttctgatcgacgtagagttgtttttgccatga |
207 |
Q |
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| T |
50242980 |
tctgaacgcgttgtcaacattcgcaatgtctttcgtgatttcattggaaaactctacgagatgggtcgttctgatcgacgtagagttgtttttgccatga |
50243079 |
T |
|
| Q |
208 |
aagctggtttaagtttggctcttgtttctcttttcatttacattaaggaaaaacaacttagcaagtactctatttgggctattctcactgttgtcgttgt |
307 |
Q |
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| T |
50243080 |
aagctggtttaagtttggctcttgtttctcttttcatttacattaaggaaaaacaacttagcaagtactctatttgggctattctcactgttgtcgttgt |
50243179 |
T |
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| Q |
308 |
tttcgaattcagcataggtagg |
329 |
Q |
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| T |
50243180 |
tttcgaattcagcataggtagg |
50243201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 43816879 - 43816826
Alignment:
| Q |
274 |
actctatttgggctattctcactgttgtcgttgttttcgaattcagcataggta |
327 |
Q |
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| T |
43816879 |
actctgtttgggctattctaactgttgtcgtagtctttgaattcagtataggta |
43816826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 327
Target Start/End: Complemental strand, 43831783 - 43831730
Alignment:
| Q |
274 |
actctatttgggctattctcactgttgtcgttgttttcgaattcagcataggta |
327 |
Q |
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||||| |||||||||||||||| ||||| ||||| || |||||||| ||||||| |
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| T |
43831783 |
actctgtttgggctattctcaccgttgtagttgtctttgaattcagtataggta |
43831730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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