View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_32 (Length: 319)
Name: NF17082_low_32
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 3e-85; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 132 - 303
Target Start/End: Complemental strand, 13880836 - 13880666
Alignment:
| Q |
132 |
caaagtagatcaatggtggaggatttgtgaaaaaatcaattcaatgtttatgaaattggtagctgcagtaactacatcttttgtttcctatgcgacattt |
231 |
Q |
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| T |
13880836 |
caaagtagatcaatggtggaggatttgtgaaaaa-tcaattcaatgtttatgaaattggtagctgcagtaactacatcttttgtttcctatgcgacattt |
13880738 |
T |
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| Q |
232 |
accatattactatatcttttgtaagatcgaattctatgctttttattccacgtagttttctatatacaaatt |
303 |
Q |
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| T |
13880737 |
accatattactacatcttttgtaagatcgaattctatgctttttattccacgtagttttctatatacaaatt |
13880666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 13881122 - 13880988
Alignment:
| Q |
1 |
ttcacatacttctggataacagactcatgccccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatgg |
100 |
Q |
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| T |
13881122 |
ttcacatacttctggataacagactcatgccccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatgg |
13881023 |
T |
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| Q |
101 |
aaatataacattataattttcatcttatcctcaaa |
135 |
Q |
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| T |
13881022 |
aaatataacattataattttcatcttatcctcaaa |
13880988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 13254515 - 13254381
Alignment:
| Q |
1 |
ttcacatacttctggataacagactcatgccccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcagtcagtcttcaaatctgatgg |
100 |
Q |
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| T |
13254515 |
ttcacatacttctggataacagactcatgccccttaacaatgaaggaggtgatacataggccaccatttgaggttctcagtcagtcttcaaatctgatga |
13254416 |
T |
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| Q |
101 |
aaatataacattataattttcatcttatcctcaaa |
135 |
Q |
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| T |
13254415 |
aaatgttacattataattttcatcttatcctcaaa |
13254381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 209 - 300
Target Start/End: Complemental strand, 13254045 - 13253954
Alignment:
| Q |
209 |
cttttgtttcctatgcgacatttaccatattactatatcttttgtaagatcgaattctatgctttttattccacgtagttttctatatacaa |
300 |
Q |
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| T |
13254045 |
cttttgtttcctatgcgacatttaccatattactacatcttttgtaagatcaaattctatgctttttactccacttagttttttatatacaa |
13253954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 14367320 - 14367395
Alignment:
| Q |
5 |
catacttctggataacagactcatgccccttaacagtgaaggaggtgatgcagaggccaccatttgagcttctcag |
80 |
Q |
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| T |
14367320 |
catacttctggataacagactcatgccccttaacagtgaaggaggtgatgcataagccaccatttgaggttctcag |
14367395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 162 - 200
Target Start/End: Complemental strand, 13254277 - 13254239
Alignment:
| Q |
162 |
aaaaatcaattcaatgtttatgaaattggtagctgcagt |
200 |
Q |
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| T |
13254277 |
aaaaatcaattcaatgtttatgaaattggtagctgcagt |
13254239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 198
Target Start/End: Complemental strand, 13878144 - 13878079
Alignment:
| Q |
132 |
caaagtagatcaatggtggaggatttgtgaaaaaatcaattcaatgtttatgaaattggtagctgca |
198 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||| | ||||||||||| |||||| |
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| T |
13878144 |
caaagtagatcaatggtggaggatatgtg-ggaaatcaattcaatggtgatgaaattggtggctgca |
13878079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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