View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_33 (Length: 316)
Name: NF17082_low_33
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_33 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 17 - 316
Target Start/End: Complemental strand, 23467236 - 23466935
Alignment:
| Q |
17 |
atgcaatgaatctaaaacgtgttttttatagtaatgacctagctaacacttgaagtgtgaaattaatgataatagttcagcctttataacttcaagagtt |
116 |
Q |
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| T |
23467236 |
atgcaatgaatctaaaacgtgttttttatagtgatgacctagctaacacttgaagtgtgagattaatgataatagttcagcctttataacttcaagagat |
23467137 |
T |
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| Q |
117 |
gaagttaaaacctctcgattgtaaaatggtcaacagtgtcaatttaattgata--aattaaaatatgaaatctccattacctggccgtgcaattctttgc |
214 |
Q |
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| T |
23467136 |
gaagttcaaacctctcgattgtaaaatggtcatcagtgtcaatttaattgatataaattaaaatatgaaatctccattacctggccgtgcaattctttgc |
23467037 |
T |
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| Q |
215 |
gagctgtggcagcagcagtttcagaattgaacctcacaaatccgtacccttttgactctccagtcctgtggttacatattactttaactacacaaaaaca |
314 |
Q |
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| T |
23467036 |
gagctgtggcagctgcagtttcagaattgaacctcacaaatccgtacccttttgactctccagtcctgtggttacatattactttaactacacaaaaaca |
23466937 |
T |
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| Q |
315 |
tt |
316 |
Q |
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|| |
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| T |
23466936 |
tt |
23466935 |
T |
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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 6399113 - 6399080
Alignment:
| Q |
138 |
taaaatggtcaacagtgtcaatttaattgataaa |
171 |
Q |
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| T |
6399113 |
taaaatggtcaccagtgtcaatttaattgataaa |
6399080 |
T |
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