View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_34 (Length: 305)
Name: NF17082_low_34
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_34 |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 47705229 - 47705505
Alignment:
| Q |
18 |
cacatccagtgtttatagactccacaagtctagggctagctacttcatagccacttggacacaagcaaaacttgctttttcccatgagtttaaagtactt |
117 |
Q |
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| T |
47705229 |
cacatccagtgtttatagactccacaagtctagggctagctacttcatagccacttggacacaagcaaaacttgctttttcccatgagtttaaagtactt |
47705328 |
T |
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| Q |
118 |
aagnnnnnnnggaagatattcatacactagtacttctttatcttttcctttccattgatctagtaatgtctttctaatcataccatgttcccctccagca |
217 |
Q |
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| T |
47705329 |
aagtttttttggaagatattcatacactagtacttctttatcttttcctttccattgatctagtaatgtctttctaatcataccatgttcccctccagca |
47705428 |
T |
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| Q |
218 |
aagaaagcaagtatagaacgattatttgggtctttgcttggaattggtgagctcaacttgtaaccttgtaggttcat |
294 |
Q |
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| T |
47705429 |
aagaaagcaagtatagaacgattatttgattctttgcttggaattggtgagctcaacttgtaaccttgtaggttcat |
47705505 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 93
Target Start/End: Complemental strand, 44629206 - 44629169
Alignment:
| Q |
56 |
gctacttcatagccacttggacacaagcaaaacttgct |
93 |
Q |
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| T |
44629206 |
gctacttcataaccacttggacacaaacaaaacttgct |
44629169 |
T |
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