View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_low_36 (Length: 296)

Name: NF17082_low_36
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_low_36
NF17082_low_36
[»] chr1 (3 HSPs)
chr1 (12-296)||(5390606-5390890)
chr1 (12-217)||(5399404-5399609)
chr1 (12-220)||(5394220-5394428)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 12 - 296
Target Start/End: Complemental strand, 5390890 - 5390606
Alignment:
Q  12 agagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttggat 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5390890 agagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttggat 5390791  T
Q  112 agtatgaacaaggctaaggaacatggattcttgggatttaggaattctaagaattctttcattagttcgattgacaagactaaagtctacaagattgtgc 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||| |||||||| |||||||||||||    
T  5390790 agtatgaacaagtctaaggaacatggattcttgggatttaggaattctaagaatgtgttcattagttggattgacaaaactaaagtgtacaagattgtgc 5390691  T
Q  212 catgatgatctgagctctggattgtttgaaataaagttcgcctggtggggtggaaagaacannnnnnnacttttctatgttttat 296  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||       |||||||||||||||||    
T  5390690 catgatgatctgagctctggattgtttgaaataaagttcccctggtggggtgggaagaacaattttttacttttctatgttttat 5390606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 166; E-Value: 7e-89
Query Start/End: Original strand, 12 - 217
Target Start/End: Complemental strand, 5399609 - 5399404
Alignment:
Q  12 agagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttggat 111  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5399609 agagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttatgtttagagtggagggtgtgttggat 5399510  T
Q  112 agtatgaacaaggctaaggaacatggattcttgggatttaggaattctaagaattctttcattagttcgattgacaagactaaagtctacaagattgtgc 211  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| ||||  |||||||||||||    
T  5399509 agtatgaacaagtctaaggaacatggattcttaggatttaggaattctaagaattcgttcattagttggattgataagacaaaagcttacaagattgtgc 5399410  T
Q  212 catgat 217  Q
    ||||||    
T  5399409 catgat 5399404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 12 - 220
Target Start/End: Complemental strand, 5394428 - 5394220
Alignment:
Q  12 agagattgtgagggagaatgaattgttgcacaccaagcttgaagaagttggagattggtggtttgcagattttatgttgagagtggagggtgtgttggat 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||||    
T  5394428 agagattgtgagggagaatgaattgttgtacaccaagcttgaagaagttggagattggtggtttgcagattttagtttgagactggagggtgtgttggat 5394329  T
Q  112 agtatgaacaaggctaaggaacatggattcttgggatttaggaattctaagaattctttcattagttcgattgacaagactaaagtctacaagattgtgc 211  Q
      ||||||||| |||||||||||||||||| | ||||||||||||||||||||||| |||||||||| |||||||||||| ||||  |||||||||||||    
T  5394328 tctatgaacaaagctaaggaacatggattcataggatttaggaattctaagaattcattcattagttggattgacaagacaaaagcttacaagattgtgc 5394229  T
Q  212 catgatgat 220  Q
    |||||||||    
T  5394228 catgatgat 5394220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University