View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_4 (Length: 586)
Name: NF17082_low_4
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 1 - 571
Target Start/End: Complemental strand, 1837010 - 1836438
Alignment:
| Q |
1 |
gcaaggcagctacgtcgtatgcagccgctgccatctctggtgtctcgaaacttcctaaccagattcttgttttggtgccgggctcacgaatttcggaaac |
100 |
Q |
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| T |
1837010 |
gcaaggcagctacgtcgtatgcagccgctgccatctctggtgtctcgaaacttcctaaccagattcttgttttggtgccgggctcgcgaatttcggaaac |
1836911 |
T |
|
| Q |
101 |
ccatttaccccattttctcttacggactcctctgtatgcagaactagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836910 |
ccatttaccccattttctcttacggactcctctgtatgcagaactagcagcaccacttgaagacattgttcatgcaaattaagtatagtttttatcgaaa |
1836811 |
T |
|
| Q |
201 |
tataattatgtccatgttagttggtacttgatattgatactttctagtgagaaattttgtctatgccatagaaaggtatttatagatattgtgattgtgc |
300 |
Q |
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|||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836810 |
tatatttatgtcaatgttagttggtacttgatattgttactttctagtgagaaattttgtctatgccatagaaaggtatttatagatattgtgattgtgc |
1836711 |
T |
|
| Q |
301 |
gtacctagctttcaggtgaaactctttggaagtgagtttcctcgtaggtgcacaaaatttgtgtttgtatgtgctgctacac--nnnnnnnnnacttagt |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1836710 |
gtacctagctttcaggtgaaactctttggaagtgagtttcctcgtaggtgcacaaaatttgtgtttgtatgtgctgctacactttttttttttacttagt |
1836611 |
T |
|
| Q |
399 |
ttatttaattgtgaaaatgcttatgtgcaatttagcacggatcagatttttatattgtatattaaatgttgactgaaagtgaaattaagagcatggtaat |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1836610 |
ttatttaattgtgaaaatgcttatgtgcaatttagcacggatgagatttttatattgtatattaaatgttgattgaaagtgaaattaagagcatggtaat |
1836511 |
T |
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| Q |
499 |
taatgttagagtgacatgtgtgtgaccacttttgaacttgaaattatgggaatggattggcgcaatgtttatg |
571 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1836510 |
taatgttagagtgacatgtgtgtgaccacttttgaacttgaaattatgggaatggattggcgcaatgtttatg |
1836438 |
T |
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