View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_40 (Length: 290)
Name: NF17082_low_40
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 10 - 147
Target Start/End: Complemental strand, 3609033 - 3608896
Alignment:
| Q |
10 |
aagaatatggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaatttccacatattttccatgtcttc |
109 |
Q |
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| T |
3609033 |
aagaataaggattaaagaagaaatagtggcctccttggagagataccacgttccgcagccaaaatcacggagacaatttccacatattttccatgtcttc |
3608934 |
T |
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| Q |
110 |
tttaattggtaaattttccaattatgagtttgaggggg |
147 |
Q |
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| T |
3608933 |
tttaattagtaaattttccaattatgagtttgaggggg |
3608896 |
T |
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Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 204 - 274
Target Start/End: Complemental strand, 3608835 - 3608764
Alignment:
| Q |
204 |
taatgtctcacaagctctttatatataaagcatctcatgtatt-attcaatatattttgatcattataattt |
274 |
Q |
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| T |
3608835 |
taatgtctcacaagctctttatatataaagcatctcatgtattcattcaatatattttgatcattataattt |
3608764 |
T |
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