View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_low_42 (Length: 282)
Name: NF17082_low_42
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_42 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 7 - 266
Target Start/End: Complemental strand, 53941480 - 53941221
Alignment:
| Q |
7 |
ttaattttatagtaatgttggaggagggggtttcaagaactggaaaaatgaaaggctcgcaattatgatatattacatgtgtttcgaatgtgctcctcct |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
53941480 |
ttaattttatagtaatgttggaggagggggtttcaagaactggaaaaaagaaaggctcgcaattatgatatattacatgtgtttggaatgtgctcctcct |
53941381 |
T |
|
| Q |
107 |
aatgtctcggtttagattctccatgttgtcaatatcaataagttagtttgacttcttcnnnnnnnttatatattacatatgttcaacattaatttgtagt |
206 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
53941380 |
aatgtctcggcttagattctccatgttgttaatatcagtgagttagtttgacttcttcaaaaaaattatatattacatatgttcaacattaatttgtagt |
53941281 |
T |
|
| Q |
207 |
catccactacagtccaaacctcacgaacaatatcctttgcaggcatttccatcaaaacaa |
266 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
53941280 |
catccactacagtccaaacctcacgaacaatatccttcgcaggcatttccatcaaaacaa |
53941221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 55445851 - 55445795
Alignment:
| Q |
186 |
tgttcaacattaatttgtagtcatccactacagtccaaacctcacgaacaatatcct |
242 |
Q |
| |
|
||||||||||||| || |||||||| ||| |||||||| ||| |||||||||||||| |
|
|
| T |
55445851 |
tgttcaacattaaattatagtcatctactgcagtccaagccttacgaacaatatcct |
55445795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University