View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17082_low_45 (Length: 280)
Name: NF17082_low_45
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_45 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 14 - 265
Target Start/End: Complemental strand, 38541111 - 38540861
Alignment:
| Q |
14 |
aaattaaactgttcttataaattacatacccaaataatttttccaaggatatttatttttacagaagatgtaaaatagttcgtccacttgcattcatcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38541111 |
aaattaaactgttcttataaattacatacccaaataatttttccaaggatatttatttttacagaagatgtaaaatagttcgtccacttgcattcatcca |
38541012 |
T |
|
| Q |
114 |
atgagcatcttgaagttagttgcatgacattatatatatatcgatggttttttataaagttattttgcattgcaagtgcatttcaattgaactccattat |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38541011 |
atgagcatcttgaagttagttgcatgacattatatatatatcgatggttttttataaaattattttgcattgcaagtgcatttcaattgaactccattat |
38540912 |
T |
|
| Q |
214 |
ctttnnnnnnnntcactacattttactttagttttaagaatctcatatgaaa |
265 |
Q |
| |
|
| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38540911 |
catt-aaataaatcactacattttactttagttttaagaatctcatatgaaa |
38540861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 207
Target Start/End: Original strand, 5343989 - 5344193
Alignment:
| Q |
14 |
aaattaaactgttcttataaattacatacccaaataatttttccaaggatatttatttttacagaagatgta-----------aaatagttcgtccactt |
102 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||| |||||||||| ||||| || |||||| |
|
|
| T |
5343989 |
aaattaaactgctcttacaaattacatacccaaataatatttttaaggatatttattttcgtagaagatgtattgagaatgtaaaataatttttccactg |
5344088 |
T |
|
| Q |
103 |
gcattcatcca----atgagcatcttgaagttagttgcatgacattatatatatatcgatggttttttataaagttattttgcattgcaagtgcatttca |
198 |
Q |
| |
|
|||| |||||| ||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
5344089 |
gcatccatccatccaatgagcatcttgaaggtagttgcatgacattatatatttat----ggttttttataaaattattttatattgcaagtgcatttca |
5344184 |
T |
|
| Q |
199 |
attgaactc |
207 |
Q |
| |
|
||||||||| |
|
|
| T |
5344185 |
attgaactc |
5344193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 25224228 - 25224370
Alignment:
| Q |
19 |
aaactgttcttataaattacatacccaaataatttttccaaggatatttatttttacagaagatgt-----------aaaatagttcgtccacttgcatt |
107 |
Q |
| |
|
|||||| ||||| ||||||||||| |||||||||| |||||||||||||||||| | ||||||||| ||||||| | |||||| |||| |
|
|
| T |
25224228 |
aaactgctcttacaaattacatactcaaataatttctccaaggatatttattttcatagaagatgtattgacaatgtaaaatagcttttccactggcatc |
25224327 |
T |
|
| Q |
108 |
catccaatgagcatcttgaagttagttgcatgacattatatat |
150 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
25224328 |
catccaatgagcatcttgaagtttgttgcatgacattatatat |
25224370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University