View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_47 (Length: 271)
Name: NF17082_low_47
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_47 |
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| [»] chr3 (5 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 118 - 271
Target Start/End: Original strand, 1622974 - 1623127
Alignment:
| Q |
118 |
ctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaata |
217 |
Q |
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| T |
1622974 |
ctctcaaagtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaata |
1623073 |
T |
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| Q |
218 |
gctatagcacaacataaatgatcaaagaccagatgtaaatggcacaatagttgt |
271 |
Q |
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| T |
1623074 |
gctatagcacaacataaatgatcaaagaccagatgtaaatggcacggtagttgt |
1623127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 125 - 271
Target Start/End: Original strand, 1605859 - 1606005
Alignment:
| Q |
125 |
agtgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaatagctatag |
224 |
Q |
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| T |
1605859 |
agtgtacaaaagaatatgagcatgctcttacaagaattacaatgaacttaattacaaagaattaagtacaataactgaggcaatgaagaaatagctatag |
1605958 |
T |
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| Q |
225 |
cacaacataaatgatcaaagaccagatgtaaatggcacaatagttgt |
271 |
Q |
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| T |
1605959 |
cacaacataaatgatcaaagaccagatgtaaatggcacagtagttgt |
1606005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 56
Target Start/End: Original strand, 1622866 - 1622912
Alignment:
| Q |
10 |
attattcttaatagctcctctcaaactcaatgtatgattgtacaacg |
56 |
Q |
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| T |
1622866 |
attattcttaatagctcctctcaaactcaatgtatgattgtacaacg |
1622912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 215 - 271
Target Start/End: Original strand, 1629247 - 1629303
Alignment:
| Q |
215 |
atagctatagcacaacataaatgatcaaagaccagatgtaaatggcacaatagttgt |
271 |
Q |
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| T |
1629247 |
atagctataccaaaatacaaatgatcaaagaccagatgtaaatggcacagtagttgt |
1629303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 10821433 - 10821397
Alignment:
| Q |
233 |
aaatgatcaaagaccagatgtaaatggcacaatagtt |
269 |
Q |
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| T |
10821433 |
aaatgatcaaagaccagatgtaaatggcacagtagtt |
10821397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 271
Target Start/End: Original strand, 18780677 - 18780821
Alignment:
| Q |
127 |
tgtacaaaagaatatgagcatgctcttacaataattacaatgaacttaattacaaagaattaagtacaataacggaggtagtaaagaaatagctatagca |
226 |
Q |
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| T |
18780677 |
tgtacaaaagaatatgggtatgctcttacaagaattacaatgaatttaattacaaagaattaagtacaataattgaagcaatgaagaaatagctatagca |
18780776 |
T |
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| Q |
227 |
caacataaatgatcaaagaccagatgtaaatggcacaatagttgt |
271 |
Q |
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| T |
18780777 |
caacataaaagatcaaagaccagatgtaaatggcacagtagttgt |
18780821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 18780565 - 18780607
Alignment:
| Q |
14 |
ttcttaatagctcctctcaaactcaatgtatgattgtacaacg |
56 |
Q |
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| T |
18780565 |
ttcttaatagcttccctcaaactcaaggtatgattgtacaacg |
18780607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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