View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_49 (Length: 269)
Name: NF17082_low_49
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_49 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 247
Target Start/End: Complemental strand, 4624229 - 4624002
Alignment:
| Q |
20 |
tttcatcacctaacatcagcagatccatccctatcagaatcatcatcattgacacaaataaagaaacaccatggttggcaccataaatgtatagaaacac |
119 |
Q |
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| T |
4624229 |
tttcatcacctaacatcagcagatccatccctatcagaatcatcatcattgacacagataaagaaacaccatggttggcaccataaatatatagaaacac |
4624130 |
T |
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| Q |
120 |
catggttggcacaaataaagaaacatagaagcaaaagcccctgcttcgtgaaagaaaaacataaacaaaggtgaaagagagacatggacatggtggaggt |
219 |
Q |
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| T |
4624129 |
catggttggcacaaataaagaaacatagaagcaaaagcccctgtttcgtaaaagaaaaacataaacaaaggtgaaagagagacatggacatggtggaggt |
4624030 |
T |
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| Q |
220 |
tatttgagtttcttaaggatacatgtga |
247 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
4624029 |
tatttgagtttcttaaggatacatgtga |
4624002 |
T |
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