View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_low_51 (Length: 265)

Name: NF17082_low_51
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_low_51
NF17082_low_51
[»] chr4 (10 HSPs)
chr4 (78-151)||(13651860-13651933)
chr4 (78-151)||(13659985-13660058)
chr4 (78-151)||(13643476-13643549)
chr4 (78-151)||(13646296-13646369)
chr4 (78-151)||(13663827-13663900)
chr4 (78-151)||(13649063-13649136)
chr4 (233-265)||(45097172-45097204)
chr4 (117-146)||(13642182-13642211)
chr4 (233-265)||(20747437-20747469)
chr4 (233-265)||(45742813-45742845)
[»] chr5 (6 HSPs)
chr5 (233-265)||(3497538-3497570)
chr5 (233-265)||(16153262-16153294)
chr5 (234-265)||(16127526-16127557)
chr5 (233-265)||(9020692-9020724)
chr5 (233-265)||(16127257-16127289)
chr5 (233-265)||(31657683-31657715)
[»] chr1 (8 HSPs)
chr1 (233-265)||(41855480-41855512)
chr1 (233-265)||(47069055-47069087)
chr1 (234-265)||(15810971-15811002)
chr1 (233-265)||(9202243-9202275)
chr1 (233-265)||(11741395-11741427)
chr1 (233-265)||(35984400-35984432)
chr1 (233-265)||(37951956-37951988)
chr1 (233-265)||(39497431-39497463)
[»] chr3 (14 HSPs)
chr3 (234-265)||(20862195-20862226)
chr3 (235-265)||(36098966-36098996)
chr3 (235-265)||(53361594-53361624)
chr3 (233-265)||(7181348-7181380)
chr3 (233-265)||(12050399-12050431)
chr3 (233-265)||(14428876-14428908)
chr3 (233-265)||(20862464-20862496)
chr3 (233-265)||(22103936-22103968)
chr3 (233-265)||(25149129-25149161)
chr3 (233-265)||(26806113-26806145)
chr3 (233-265)||(37728711-37728743)
chr3 (233-265)||(44543780-44543812)
chr3 (233-265)||(50647682-50647714)
chr3 (233-265)||(51284069-51284101)
[»] chr2 (6 HSPs)
chr2 (234-265)||(34113530-34113561)
chr2 (234-265)||(40680726-40680757)
chr2 (235-265)||(17408034-17408064)
chr2 (233-265)||(11201681-11201713)
chr2 (233-265)||(22182931-22182963)
chr2 (233-265)||(34883855-34883887)
[»] chr8 (8 HSPs)
chr8 (235-265)||(8948358-8948388)
chr8 (233-262)||(4631565-4631594)
chr8 (233-261)||(4631291-4631319)
chr8 (233-265)||(13153926-13153958)
chr8 (233-265)||(28572044-28572076)
chr8 (233-265)||(28579637-28579669)
chr8 (233-265)||(34568488-34568520)
chr8 (233-265)||(44250857-44250889)
[»] chr6 (2 HSPs)
chr6 (235-265)||(1147274-1147304)
chr6 (233-265)||(12144045-12144077)
[»] scaffold0008 (1 HSPs)
scaffold0008 (233-265)||(259129-259161)
[»] chr7 (3 HSPs)
chr7 (233-265)||(32814431-32814463)
chr7 (233-265)||(33858873-33858905)
chr7 (233-265)||(39871620-39871652)


Alignment Details
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13651860 - 13651933
Alignment:
Q  78 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 151  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13651860 acattgagactcagggtattcataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 13651933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13659985 - 13660058
Alignment:
Q  78 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 151  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13659985 acattgagactcagggtattcataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 13660058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13643476 - 13643549
Alignment:
Q  78 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 151  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13643476 acattgagtctcagggtattcatgatgatgtctttagggataaattttgtttgcctaactttcacttcccttag 13643549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13646296 - 13646369
Alignment:
Q  78 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 151  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13646296 acattgagtctcagggtattcatgatgatgtctttagggataaattttgtttgcctaactttcacttcccttag 13646369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13663827 - 13663900
Alignment:
Q  78 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 151  Q
    |||||||| ||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13663827 acattgagtctcagggtattcatgatgatgtctttagggataaattttgtttgcctaactttcacttcccttag 13663900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 13649063 - 13649136
Alignment:
Q  78 acattgagactcagggtatttataatgatgtctttagggacaaattttgtttgcctaactttcacttcccttag 151  Q
    |||||||||||| ||||||| || |||||||||||||||||||||||||||||||| | | |||||| ||||||    
T  13649063 acattgagactcggggtattcatgatgatgtctttagggacaaattttgtttgcctgattctcacttaccttag 13649136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 45097204 - 45097172
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||||    
T  45097204 aatactccatccgtccctaattataagaccctt 45097172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 117 - 146
Target Start/End: Original strand, 13642182 - 13642211
Alignment:
Q  117 acaaattttgtttgcctaactttcacttcc 146  Q
    ||||||||||||||||||||||||||||||    
T  13642182 acaaattttgtttgcctaactttcacttcc 13642211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 20747469 - 20747437
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  20747469 aatactccctccgtccctaattataagaccctt 20747437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 45742845 - 45742813
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  45742845 aatactccctccgtccctaattataagaccctt 45742813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 3497538 - 3497570
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||||    
T  3497538 aatactccatccgtccctaattataagaccctt 3497570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 16153294 - 16153262
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||||    
T  16153294 aatactccatccgtccctaattataagaccctt 16153262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Complemental strand, 16127557 - 16127526
Alignment:
Q  234 atactccatccgtccctaattataagaccctt 265  Q
    ||||||||||||||||||||||||||||||||    
T  16127557 atactccatccgtccctaattataagaccctt 16127526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 9020692 - 9020724
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  9020692 aatactccctccgtccctaattataagaccctt 9020724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 16127257 - 16127289
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  16127257 aatactccctccgtccctaattataagaccctt 16127289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 31657683 - 31657715
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||| ||||||||||||||||||||||||||    
T  31657683 aatactacatccgtccctaattataagaccctt 31657715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 41855512 - 41855480
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||||    
T  41855512 aatactccatccgtccctaattataagaccctt 41855480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 47069087 - 47069055
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||||    
T  47069087 aatactccatccgtccctaattataagaccctt 47069055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 15810971 - 15811002
Alignment:
Q  234 atactccatccgtccctaattataagaccctt 265  Q
    ||||||||||||||||||||||||||||||||    
T  15810971 atactccatccgtccctaattataagaccctt 15811002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 9202243 - 9202275
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  9202243 aatactccctccgtccctaattataagaccctt 9202275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 11741395 - 11741427
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  11741395 aatactccctccgtccctaattataagaccctt 11741427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 35984400 - 35984432
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  35984400 aatactccttccgtccctaattataagaccctt 35984432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 37951988 - 37951956
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  37951988 aatactccctccgtccctaattataagaccctt 37951956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 39497431 - 39497463
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  39497431 aatactccctccgtccctaattataagaccctt 39497463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 20862195 - 20862226
Alignment:
Q  234 atactccatccgtccctaattataagaccctt 265  Q
    ||||||||||||||||||||||||||||||||    
T  20862195 atactccatccgtccctaattataagaccctt 20862226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 36098966 - 36098996
Alignment:
Q  235 tactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||    
T  36098966 tactccatccgtccctaattataagaccctt 36098996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 53361594 - 53361624
Alignment:
Q  235 tactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||    
T  53361594 tactccatccgtccctaattataagaccctt 53361624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 7181348 - 7181380
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  7181348 aatactccctccgtccctaattataagaccctt 7181380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 12050431 - 12050399
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  12050431 aatactccctccgtccctaattataagaccctt 12050399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 14428908 - 14428876
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  14428908 aatactccctccgtccctaattataagaccctt 14428876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 20862496 - 20862464
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  20862496 aatactccctccgtccctaattataagaccctt 20862464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 22103968 - 22103936
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  22103968 aatactccctccgtccctaattataagaccctt 22103936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 25149161 - 25149129
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  25149161 aatactccctccgtccctaattataagaccctt 25149129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 26806113 - 26806145
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  26806113 aatactccctccgtccctaattataagaccctt 26806145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 37728711 - 37728743
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  37728711 aatactccctccgtccctaattataagaccctt 37728743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 44543780 - 44543812
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  44543780 aatactccctccgtccctaattataagaccctt 44543812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 50647682 - 50647714
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  50647682 aatactccctccgtccctaattataagaccctt 50647714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 51284101 - 51284069
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  51284101 aatactccctccgtccctaattataagaccctt 51284069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 34113530 - 34113561
Alignment:
Q  234 atactccatccgtccctaattataagaccctt 265  Q
    ||||||||||||||||||||||||||||||||    
T  34113530 atactccatccgtccctaattataagaccctt 34113561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 265
Target Start/End: Original strand, 40680726 - 40680757
Alignment:
Q  234 atactccatccgtccctaattataagaccctt 265  Q
    ||||||||||||||||||||||||||||||||    
T  40680726 atactccatccgtccctaattataagaccctt 40680757  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 265
Target Start/End: Original strand, 17408034 - 17408064
Alignment:
Q  235 tactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||    
T  17408034 tactccatccgtccctaattataagaccctt 17408064  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 11201681 - 11201713
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  11201681 aatactccctccgtccctaattataagaccctt 11201713  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 22182963 - 22182931
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  22182963 aatactccctccgtccctaattataagaccctt 22182931  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 34883887 - 34883855
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  34883887 aatactccctccgtccctaattataagaccctt 34883855  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 8948388 - 8948358
Alignment:
Q  235 tactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||    
T  8948388 tactccatccgtccctaattataagaccctt 8948358  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 233 - 262
Target Start/End: Complemental strand, 4631594 - 4631565
Alignment:
Q  233 aatactccatccgtccctaattataagacc 262  Q
    ||||||||||||||||||||||||||||||    
T  4631594 aatactccatccgtccctaattataagacc 4631565  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 261
Target Start/End: Original strand, 4631291 - 4631319
Alignment:
Q  233 aatactccatccgtccctaattataagac 261  Q
    |||||||||||||||||||||||||||||    
T  4631291 aatactccatccgtccctaattataagac 4631319  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 13153926 - 13153958
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  13153926 aatactccctccgtccctaattataagaccctt 13153958  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 28572044 - 28572076
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  28572044 aatactccctccgtccctaattataagaccctt 28572076  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 28579637 - 28579669
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  28579637 aatactccctccgtccctaattataagaccctt 28579669  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 34568488 - 34568520
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  34568488 aatactccctccgtccctaattataagaccctt 34568520  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 44250857 - 44250889
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  44250857 aatactccctccgtccctaattataagaccctt 44250889  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 265
Target Start/End: Complemental strand, 1147304 - 1147274
Alignment:
Q  235 tactccatccgtccctaattataagaccctt 265  Q
    |||||||||||||||||||||||||||||||    
T  1147304 tactccatccgtccctaattataagaccctt 1147274  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 12144077 - 12144045
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  12144077 aatactccctccgtccctaattataagaccctt 12144045  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 259161 - 259129
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  259161 aatactccctccgtccctaattataagaccctt 259129  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Original strand, 32814431 - 32814463
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  32814431 aatactccctccgtccctaattataagaccctt 32814463  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 33858905 - 33858873
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  33858905 aatactccctccgtccctaattataagaccctt 33858873  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 39871652 - 39871620
Alignment:
Q  233 aatactccatccgtccctaattataagaccctt 265  Q
    |||||||| ||||||||||||||||||||||||    
T  39871652 aatactccctccgtccctaattataagaccctt 39871620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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