View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_low_54 (Length: 261)

Name: NF17082_low_54
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_low_54
NF17082_low_54
[»] chr7 (4 HSPs)
chr7 (19-236)||(45243689-45243906)
chr7 (19-204)||(45230422-45230611)
chr7 (19-138)||(45237940-45238059)
chr7 (125-229)||(45238070-45238170)
[»] chr1 (4 HSPs)
chr1 (20-187)||(29467764-29467931)
chr1 (49-177)||(29443315-29443443)
chr1 (20-179)||(29453296-29453455)
chr1 (20-179)||(29423256-29423415)
[»] chr2 (25 HSPs)
chr2 (20-175)||(9328590-9328745)
chr2 (51-175)||(10335866-10335990)
chr2 (20-175)||(8573501-8573656)
chr2 (20-163)||(9284198-9284341)
chr2 (56-175)||(9291964-9292083)
chr2 (19-175)||(9061137-9061293)
chr2 (50-175)||(9065589-9065714)
chr2 (49-184)||(16269109-16269244)
chr2 (20-126)||(9320973-9321079)
chr2 (63-184)||(9364662-9364783)
chr2 (20-169)||(10353100-10353249)
chr2 (27-175)||(10371856-10372004)
chr2 (50-173)||(12012544-12012667)
chr2 (45-175)||(7115638-7115768)
chr2 (65-173)||(12006116-12006224)
chr2 (49-175)||(9316039-9316159)
chr2 (65-175)||(9274557-9274667)
chr2 (21-187)||(11987474-11987637)
chr2 (24-175)||(10347780-10347931)
chr2 (50-122)||(12018937-12019009)
chr2 (64-147)||(17566107-17566190)
chr2 (64-147)||(7611974-7612057)
chr2 (66-126)||(8579532-8579592)
chr2 (133-187)||(8576393-8576447)
chr2 (145-174)||(7612070-7612099)
[»] chr3 (2 HSPs)
chr3 (19-186)||(37462479-37462649)
chr3 (66-174)||(39427680-39427791)
[»] chr8 (1 HSPs)
chr8 (49-175)||(41966701-41966827)
[»] chr4 (2 HSPs)
chr4 (50-169)||(26574882-26575001)
chr4 (80-126)||(561273-561319)
[»] scaffold0667 (1 HSPs)
scaffold0667 (19-187)||(4461-4629)
[»] chr5 (1 HSPs)
chr5 (65-137)||(36224454-36224526)


Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 19 - 236
Target Start/End: Original strand, 45243689 - 45243906
Alignment:
Q  19 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcaccca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45243689 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagaaccatattctttcatcaccca 45243788  T
Q  119 aacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaatattgaaacaactctcagtctcattttcaatc 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  45243789 aacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcatcatcaatattgaaacaactcacagtctcattttcaatc 45243888  T
Q  219 tctggaagaggtaagagg 236  Q
    |||| |||||||||||||    
T  45243889 tctgaaagaggtaagagg 45243906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 45230422 - 45230611
Alignment:
Q  19 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcaccca 118  Q
    ||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  45230422 ataaaggtctcaaagataccaaatgaaaattgaaccacgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcaccca 45230521  T
Q  119 aa---catcaatttcattagtttgataattcacaatcatacaaagacactc-tcccaaaaccgcagcatcaatattgaaacaactctcag 204  Q
    ||   ||||||||| |||||||||||||||||||||||||||||||||||| |||||||||  ||| |||||| | ||||||||||||||    
T  45230522 aacatcatcaattttattagtttgataattcacaatcatacaaagacactcttcccaaaacgccagtatcaatgtcgaaacaactctcag 45230611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 45237940 - 45238059
Alignment:
Q  19 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcaccca 118  Q
    |||||||||||||  ||| || |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  45237940 ataaaggcctcaacaatttcagatgaaaattgaaacacgattcaactaaagtaaaaagtttacaccaactatctctagatccatattctttcatcaccca 45238039  T
Q  119 aacatcaatttcattagttt 138  Q
    ||||||||||| | ||||||    
T  45238040 aacatcaatttgagtagttt 45238059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 125 - 229
Target Start/End: Original strand, 45238070 - 45238170
Alignment:
Q  125 aatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaatattgaaacaactctcagtctcattttcaatctctgga 224  Q
    ||||||| |||||||| ||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45238070 aatttcagtagtttgacaattcacaatcata----gacactctcccaaaaccgcagcatcaatattgaaacaactctcagtctcattttcaatctctgga 45238165  T
Q  225 agagg 229  Q
    |||||    
T  45238166 agagg 45238170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 29467931 - 29467764
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    ||||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| |||| |||||||| | |||||||||||||||| ||||    
T  29467931 taaaggcctcaaagattccaactgtaaagtgaaacacgatctaaccaaagtaaaaagtttacgccaactatctctacatccatattctttcatcaaccaa 29467832  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaat 187  Q
    |||||||||| | |||||||||||||||||||||   |||||||| |||||||||||||| |||||||    
T  29467831 acatcaattttactagtttgataattcacaatcaactaaagacaccctcccaaaaccgcaacatcaat 29467764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 49 - 177
Target Start/End: Complemental strand, 29443443 - 29443315
Alignment:
Q  49 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcac 148  Q
    |||||||||||| | ||||||||||||||||||||||  |||||||| | ||||||||||||||||||||||||||||||| |  |||||||||||||||    
T  29443443 tgaaacacgattcagccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcacccaaacatcaattttagcagtttgataattcac 29443344  T
Q  149 aatcatacaaagacactctcccaaaaccg 177  Q
    |||||||||||||||| || ||| |||||    
T  29443343 aatcatacaaagacacccttccagaaccg 29443315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 179
Target Start/End: Complemental strand, 29453455 - 29453296
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    |||||||| ||||| || |||| | ||| ||||||| ||||   ||||||||||||||| ||||||  |||||||| | |||||||||||||||||||||    
T  29453455 taaaggccacaaagttttcaaaggtaaaatgaaacatgattccgccaaagtaaaaagttcacaccagctatctctacatccatattctttcatcacccaa 29453356  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgca 179  Q
    |||||||||| |  ||||||||||||||||||||||||||||||| || |||||||||||    
T  29453355 acatcaattttaacagtttgataattcacaatcatacaaagacacccttccaaaaccgca 29453296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 179
Target Start/End: Original strand, 29423256 - 29423415
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    |||| ||||||||| || |||| | ||  ||||||||||||   ||||||||||||||||||||||  |||||||| | |||||||||||||||| ||||    
T  29423256 taaaagcctcaaagctttcaaaggtaaggtgaaacacgattctgccaaagtaaaaagtttacaccagctatctctacatccatattctttcatcagccaa 29423355  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgca 179  Q
    |||||||||| |  |||||||||||||||| |||||||||| ||| || ||| |||||||    
T  29423356 acatcaattttaacagtttgataattcacagtcatacaaaggcacccttccagaaccgca 29423415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 9328590 - 9328745
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    ||||||||||||||||| |||| | |||| ||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||| |||||||||||||    
T  9328590 taaaggcctcaaagatttcaaaggtaaatggaaacacgatttaaccatagtaaaaagtttacaccaactatctctatatccatattgtttcatcacccaa 9328689  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaac 175  Q
    |||||||||||| |||||| |||||||| | |||| ||||||||| ||||||||||    
T  9328690 acatcaatttcagtagtttcataattcaaagtcatgcaaagacaccctcccaaaac 9328745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 10335866 - 10335990
Alignment:
Q  51 aaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcacaa 150  Q
    |||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||     
T  10335866 aaacacgatttaaccaaagtaaaatgtttacaccaactatctctacagccatattctttcatcacccaaacatcaattttagtagtttgataattcacag 10335965  T
Q  151 tcatacaaagacactctcccaaaac 175  Q
     || |||||||||| ||||||||||    
T  10335966 gcaaacaaagacaccctcccaaaac 10335990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 8573656 - 8573501
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    |||||||||| ||||||  |||||   | |||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  8573656 taaaggcctcgaagatttaaaatgtggagtgaaacacgatttaacgaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaa 8573557  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaac 175  Q
    |||||||||||| | |||| ||||||||||  ||||||||||||| | ||||||||    
T  8573556 acatcaatttcagtggtttcataattcacagacatacaaagacacccacccaaaac 8573501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 9284341 - 9284198
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    ||||||||||||||||| |||| | ||| |||| |  ||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||||    
T  9284341 taaaggcctcaaagatttcaaacgtaaagtgaaccgtgatttaaccaaagtaaaaattttacaccaactatctctagaaccatattctttcatcacccaa 9284242  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagaca 163  Q
    || ||||||| | |||||||||||||||||||||||| ||||||    
T  9284241 acgtcaattttagtagtttgataattcacaatcatactaagaca 9284198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 9291964 - 9292083
Alignment:
Q  56 cgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcata 155  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||| | |||||| |||||||||| |||||    
T  9291964 cgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattgtttcatcacccaaacatcaattttagtagtttcataattcacagtcata 9292063  T
Q  156 caaagacactctcccaaaac 175  Q
    |||||||||||||| |||||    
T  9292064 caaagacactctcctaaaac 9292083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 9061293 - 9061137
Alignment:
Q  19 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcaccca 118  Q
    |||| ||||||||| | |||||| |  ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||||||    
T  9061293 ataacggcctcaaaaagtccaaaggtgaattgaaacacgatttaaccaaagtaaaaagtttacaccaactatctctagatccatagtctttcatcaccca 9061194  T
Q  119 aacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaac 175  Q
    ||||||||||| | ||| || ||||||||||  ||| ||||||||| | ||||||||    
T  9061193 aacatcaattttagtagcttcataattcacagacatgcaaagacacccacccaaaac 9061137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 9065714 - 9065589
Alignment:
Q  50 gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcaca 149  Q
    |||||| ||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||| | | |||||| |||||||| |    
T  9065714 gaaacaagatttgaccaaagtaaaaagtttacaccaactatctctagatccatattctttcatcacccaaccatcaatattagtagtttcataattcaaa 9065615  T
Q  150 atcatacaaagacactctcccaaaac 175  Q
    ||||||||||||||| ||||||||||    
T  9065614 atcatacaaagacaccctcccaaaac 9065589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 184
Target Start/End: Original strand, 16269109 - 16269244
Alignment:
Q  49 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcac 148  Q
    ||||||||||||||||||| ||||||||||| |||||| |||||||| | ||||| ||||||||||||||||||||||||| | |||||| |||||||||    
T  16269109 tgaaacacgatttaaccaaggtaaaaagtttgcaccaactatctctatatccatactctttcatcacccaaacatcaattttagtagtttcataattcac 16269208  T
Q  149 aatcatacaaagacactctcccaaaaccgcagcatc 184  Q
    | | |||||||||||  |||||||||| ||| ||||    
T  16269209 agttatacaaagacatcctcccaaaacagcaacatc 16269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 9320973 - 9321079
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    ||||||||||||||||| |||| | |||| | ||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  9320973 taaaggcctcaaagatttcaaaggtaaatcgtaacacgatttaaccatagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaa 9321072  T
Q  120 acatcaa 126  Q
    |||||||    
T  9321073 acatcaa 9321079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 63 - 184
Target Start/End: Original strand, 9364662 - 9364783
Alignment:
Q  63 accaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagac 162  Q
    ||||||||||| | |||||||||| ||||| |  | ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||    
T  9364662 accaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaatttgagtagtttgataattcacaatcatactaagac 9364761  T
Q  163 actctcccaaaaccgcagcatc 184  Q
    || |||||||||||||| ||||    
T  9364762 accctcccaaaaccgcaacatc 9364783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 10353100 - 10353249
Alignment:
Q  20 taaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaa 119  Q
    |||| |||||||||||| |||| | |||| |||| | |||||||||| ||||||||||||||||||| | |||||| | |||||||||||||||||||||    
T  10353100 taaaagcctcaaagattgcaaaggtaaatcgaaagaagatttaaccacagtaaaaagtttacaccaactctctctacatccatattctttcatcacccaa 10353199  T
Q  120 acatcaatttcattagtttgataattcacaatcatacaaagacactctcc 169  Q
    |||||||||| | ||  || ||||| ||||||||||||||||||| ||||    
T  10353200 acatcaattttagtatctttataatccacaatcatacaaagacaccctcc 10353249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 27 - 175
Target Start/End: Original strand, 10371856 - 10372004
Alignment:
Q  27 ctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaa 126  Q
    ||||||||||||||| | |||   ||||  |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  10371856 ctcaaagattccaaaggtaaacccaaacttgatttaaccaaagtaaaaagtttacaccaactatctctagaaccatattctttcatcacccaaatatcaa 10371955  T
Q  127 tttcattagtttgataattcacaatcatacaaagacactctcccaaaac 175  Q
      | | |||||| ||||| |||| |||||||||||||| |||| |||||    
T  10371956 cgttagtagttttataatccacagtcatacaaagacaccctcctaaaac 10372004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 50 - 173
Target Start/End: Complemental strand, 12012667 - 12012544
Alignment:
Q  50 gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcaca 149  Q
    |||||||||||  |||||||||||||||||||||||| ||||| || | |||||||||||||||||| | |||||||| | | ||||||||| |||||||    
T  12012667 gaaacacgattccaccaaagtaaaaagtttacaccaactatctttacaaccatattctttcatcaccaatacatcaatcttagtagtttgatgattcaca 12012568  T
Q  150 atcatacaaagacactctcccaaa 173  Q
    ||||||||||||||| ||||||||    
T  12012567 atcatacaaagacaccctcccaaa 12012544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 7115768 - 7115638
Alignment:
Q  45 aaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataat 144  Q
    |||| ||||||||| |||||||| |||||||||||||||||  | |||||||| ||||||| ||||||||||||||||||  ||| | |||||  |||||    
T  7115768 aaatcgaaacacgaattaaccaatgtaaaaagtttacaccagctgtctctagatccatattgtttcatcacccaaacatctgttttagtagttctataat 7115669  T
Q  145 tcacaatcatacaaagacactctcccaaaac 175  Q
    |||||||||||||||||||| ||||||||||    
T  7115668 tcacaatcatacaaagacaccctcccaaaac 7115638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 12006224 - 12006116
Alignment:
Q  65 caaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagacac 164  Q
    |||||||||||||||||||||| ||||| || | |||||||||||||||||||| |||||||| | | ||||||||||||||||||||| ||||||||||    
T  12006224 caaagtaaaaagtttacaccaactatctttacaaccatattctttcatcacccatacatcaatcttagtagtttgataattcacaatcaaacaaagacac 12006125  T
Q  165 tctcccaaa 173  Q
     ||||||||    
T  12006124 cctcccaaa 12006116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 9316039 - 9316159
Alignment:
Q  49 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcac 148  Q
    ||||||| || |||||||||||||||||||||||||||      ||||| ||||| ||||||||||||||||||||| ||| | |||||||||||||||     
T  9316039 tgaaacatgaattaaccaaagtaaaaagtttacaccaa------ctagatccatagtctttcatcacccaaacatcagttttagtagtttgataattcaa 9316132  T
Q  149 aatcatacaaagacactctcccaaaac 175  Q
    |||||||||||||||| ||||||||||    
T  9316133 aatcatacaaagacaccctcccaaaac 9316159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 65 - 175
Target Start/End: Original strand, 9274557 - 9274667
Alignment:
Q  65 caaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcacaatcatacaaagacac 164  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||| |||| |||| || || ||||||||| | ||||||||||||||    
T  9274557 caaagtaaaaagtttacaccaactatctgtagaaccatattctttcatcacccaaacttcaaattcagtatttcgataattcaaagtcatacaaagacac 9274656  T
Q  165 tctcccaaaac 175  Q
     || |||||||    
T  9274657 ccttccaaaac 9274667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 11987637 - 11987474
Alignment:
Q  21 aaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaa 120  Q
    ||||| |||||||||| |||| | |||  |||||||||||  | ||| || ||||||||||||||| |||||||| | ||||||||||||||||||||||    
T  11987637 aaagggctcaaagatttcaaaggtaaaacgaaacacgattccatcaatgtgaaaagtttacaccaactatctctacatccatattctttcatcacccaaa 11987538  T
Q  121 catcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaat 187  Q
     ||||||    ||||| |||| ||||||| ||| |||||||||| |||||||||| ||| |||||||    
T  11987537 tatcaat---cttagtatgatgattcacagtcaaacaaagacaccctcccaaaacagcaacatcaat 11987474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 175
Target Start/End: Original strand, 10347780 - 10347931
Alignment:
Q  24 ggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacat 123  Q
    ||||||||  ||| |||| | |||| ||||||||| | | ||| ||||||||||||||||||| |||||||| | |||||||||||||| ||||||||||    
T  10347780 ggcctcaacaatttcaaaggtaaatcgaaacacgactcagccatagtaaaaagtttacaccaactatctctacatccatattctttcatgacccaaacat 10347879  T
Q  124 caatttcattagtttgataattcacaatcatacaaagacactctcccaaaac 175  Q
    |||||| | ||  || |||||  ||| | |||||||||||| ||||||||||    
T  10347880 caattttagtatctttataatcgacagtgatacaaagacaccctcccaaaac 10347931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 12019009 - 12018937
Alignment:
Q  50 gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaaca 122  Q
    |||||||||||  | |||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||    
T  12019009 gaaacacgattccatcaaagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaaca 12018937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 17566190 - 17566107
Alignment:
Q  64 ccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattca 147  Q
    |||| ||||| | |||||||||| |||||||| | ||||||||||| ||||||||||||||||  | | |||||||||||||||    
T  17566190 ccaaggtaaacaatttacaccaattatctctaaatccatattctttaatcacccaaacatcaacattagtagtttgataattca 17566107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 7611974 - 7612057
Alignment:
Q  64 ccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattca 147  Q
    |||||||||| | |||||||||| ||||| |  | ||||||||||||||||||||||||||||  | | |||||| ||||||||    
T  7611974 ccaaagtaaacaatttacaccaactatcttttaatccatattctttcatcacccaaacatcaaacttaatagtttcataattca 7612057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 126
Target Start/End: Complemental strand, 8579592 - 8579532
Alignment:
Q  66 aaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaa 126  Q
    |||||||| | |||||||||| |||||||| | ||||||| ||||||||||||||| ||||    
T  8579592 aaagtaaacaatttacaccaactatctctaaatccatattttttcatcacccaaacctcaa 8579532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 8576447 - 8576393
Alignment:
Q  133 tagtttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaat 187  Q
    |||||| |||||||||| |||||||||||||| |||| ||||| ||| |||||||    
T  8576447 tagtttcataattcacactcatacaaagacaccctccaaaaacagcaacatcaat 8576393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 174
Target Start/End: Original strand, 7612070 - 7612099
Alignment:
Q  145 tcacaatcatacaaagacactctcccaaaa 174  Q
    ||||||||||||||||||||||||||||||    
T  7612070 tcacaatcatacaaagacactctcccaaaa 7612099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 37462479 - 37462649
Alignment:
Q  19 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcaccca 118  Q
    |||||||||||||||||| |||| |  || |||||||||||||| ||| |||| |||||||||||||| |||||||||| ||||||||||||||||||||    
T  37462479 ataaaggcctcaaagatttcaaaggtgaagtgaaacacgatttatccacagtacaaagtttacaccaactatctctagatccatattctttcatcaccca 37462578  T
Q  119 aacatcaatttcattag---tttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaa 186  Q
    |||||||| || | |||   ||| |||||||||| |||||||||||||  |||||||||| ||| ||||||    
T  37462579 aacatcaaatttagtagtttttttataattcacagtcatacaaagacagcctcccaaaacagcaacatcaa 37462649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 174
Target Start/End: Original strand, 39427680 - 39427791
Alignment:
Q  66 aaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtt---tgataattcacaatcatacaaagac 162  Q
    |||||||| | |||||||||| ||| |||| | ||||||||||||||||||||||||||||  | |||||||   | | || ||||| | ||||||||||    
T  39427680 aaagtaaacaatttacaccaactatatctatatccatattctttcatcacccaaacatcaaacttattagttccattacaactcacagtaatacaaagac 39427779  T
Q  163 actctcccaaaa 174  Q
    ||| ||||||||    
T  39427780 actttcccaaaa 39427791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 41966827 - 41966701
Alignment:
Q  49 tgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcac 148  Q
    ||||||| |||||||||||||||||||||||||||||  |||||||||| | ||||||||||||||||||||||||||  ||  |||||||||||| |||    
T  41966827 tgaaacaagatttaaccaaagtaaaaagtttacaccagctatctctagatcgatattctttcatcacccaaacatcaacatcgctagtttgataatccac 41966728  T
Q  149 aatcatacaaagacactctcccaaaac 175  Q
    || ||||||||||||| ||||||||||    
T  41966727 aaccatacaaagacaccctcccaaaac 41966701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 26574882 - 26575001
Alignment:
Q  50 gaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtttgataattcaca 149  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| | ||  || ||||| ||||    
T  26574882 gaaacacgatttaaccacagtaaaaagtttacaccaactatctctacatccatattctttcatcacccaaacatcaattttagtatctttataatccaca 26574981  T
Q  150 atcatacaaagacactctcc 169  Q
     |||||||||||||| ||||    
T  26574982 gtcatacaaagacaccctcc 26575001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Original strand, 561273 - 561319
Alignment:
Q  80 acaccaaatatctctagagccatattctttcatcacccaaacatcaa 126  Q
    ||||||| |||||||| | |||||||||||||| |||||||||||||    
T  561273 acaccaactatctctaaatccatattctttcattacccaaacatcaa 561319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 19 - 187
Target Start/End: Original strand, 4461 - 4629
Alignment:
Q  19 ataaaggcctcaaagattccaaatgaaaattgaaacacgatttaaccaaagtaaaaagtttacaccaaatatctctagagccatattctttcatcaccca 118  Q
    ||||||| ||| |||||| ||||||  || ||| ||||||||| | || ||||||||||||||||||| ||||| |  | ||||||| ||||||||||||    
T  4461 ataaaggactcgaagatttcaaatgtgaagtgacacacgatttcatcatagtaaaaagtttacaccaactatcttttaatccatattgtttcatcaccca 4560  T
Q  119 aacatcaatttcattagtttgataattcacaatcatacaaagacactctcccaaaaccgcagcatcaat 187  Q
    ||||||||||| | |||||| |||||||||| |||||||||||||  |||||||| | ||| |||||||    
T  4561 aacatcaattttagtagtttcataattcacagtcatacaaagacatcctcccaaagcagcaacatcaat 4629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 65 - 137
Target Start/End: Original strand, 36224454 - 36224526
Alignment:
Q  65 caaagtaaaaagtttacaccaaatatctctagagccatattctttcatcacccaaacatcaatttcattagtt 137  Q
    ||||||||| | |||||||||| |||||||| | |||||||||||||||||||||||||||| || |||||||    
T  36224454 caaagtaaacaatttacaccaactatctctaaatccatattctttcatcacccaaacatcaaatttattagtt 36224526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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