View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17082_low_55 (Length: 261)

Name: NF17082_low_55
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17082_low_55
NF17082_low_55
[»] chr3 (11 HSPs)
chr3 (1-261)||(11495564-11495824)
chr3 (1-237)||(2921424-2921660)
chr3 (33-257)||(7489172-7489396)
chr3 (1-237)||(5967715-5967951)
chr3 (1-191)||(3872075-3872265)
chr3 (6-252)||(10079568-10079814)
chr3 (6-194)||(10186596-10186784)
chr3 (1-178)||(11489322-11489499)
chr3 (33-237)||(4058211-4058415)
chr3 (94-242)||(4077882-4078030)
chr3 (35-200)||(4105295-4105460)
[»] chr1 (2 HSPs)
chr1 (1-261)||(17313644-17313901)
chr1 (33-255)||(13935629-13935851)
[»] chr4 (1 HSPs)
chr4 (6-191)||(5990468-5990653)
[»] chr8 (1 HSPs)
chr8 (6-261)||(18389929-18390184)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-237)||(2807-3043)
[»] chr5 (1 HSPs)
chr5 (1-233)||(16448682-16448920)
[»] chr2 (1 HSPs)
chr2 (79-169)||(42506504-42506594)


Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 11495564 - 11495824
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495564 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 11495663  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11495664 gtgaaagtattcacgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 11495763  T
Q  201 aatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaattggctga 261  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11495764 aatggaaagtcatctatggtaaactgtcgaagagaatagagagggagcatcaattggctga 11495824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 2921660 - 2921424
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    |||| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||| |    
T  2921660 caataaacaaactcttgaggacaggaagagcacccaaggtaaatgatatcattgaattacagctataagatattttcaattcctcgagcgatgtgtaatt 2921561  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 200  Q
    ||| |||| ||||| ||||||||| || | ||||||||||||||| ||| |||||||||||||||||||  ||||||| |||||||||| |||||| |||    
T  2921560 gtgcaagtcttcatcaggaaggaactctagattctcacaattacttattatgagaaatttcaaggttttccgtagaccatctgttgggagagacgtcaga 2921461  T
Q  201 aatggaaagtcatctatggtaaactttcgaagagaat 237  Q
     |||| ||| | |||||||| |||| |||||||||||    
T  2921460 gatgggaagccttctatggtcaactgtcgaagagaat 2921424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 33 - 257
Target Start/End: Original strand, 7489172 - 7489396
Alignment:
Q  33 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 132  Q
    ||||| |||||||| |||||||||||||| | |||||||||| ||||||||| | | ||||||||| |||| ||||| || ||| |||||||||||||||    
T  7489172 cccaatgtaaatgatatcattgaattacaacaataagatattatcaattccttgtgtaatgtgtaattgtgcaagtaatcgtgatgaaggaattccaaat 7489271  T
Q  133 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 232  Q
    ||| | ||||||||||| |||||||||||||| |||||||||||| |||||||| ||||||||||||| |||||||| | |||||||| |||| ||||||    
T  7489272 tctgaaaattactaattgtgagaaatttcaagatttttggtagacagtctgttgagaaagacgttagagatggaaagccgtctatggtcaactgtcgaag 7489371  T
Q  233 agaatagagagggagcatcaattgg 257  Q
    ||||| |||||||| ||||||||||    
T  7489372 agaattgagagggaacatcaattgg 7489396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 5967951 - 5967715
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    |||| |||| |||||||||||| |||||| ||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| ||  |||||||  |    
T  5967951 caataaacagactcttgaggaccgggagaacacccaaagtaaatgatatcattgaattacaactataagatattttcaattcctcaagcgatgtgtactt 5967852  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 200  Q
    ||| |||||||||||||||||||| || | |||| |||| ||||| ||| | |||| ||||||||||||||| ||||| ||||||||||||||| |  ||    
T  5967851 gtgcaagtattcatgaggaaggaactctagattcacacagttactgattgtaagaattttcaaggtttttgggagaccttctgttgggaaagacatcgga 5967752  T
Q  201 aatggaaagtcatctatggtaaactttcgaagagaat 237  Q
     |||||||  | |||||||| |||| ||| |||||||    
T  5967751 gatggaaacccgtctatggtcaactgtcgcagagaat 5967715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 3872265 - 3872075
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    |||| |||| ||||||||| |||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||| ||  |||||||| |    
T  3872265 caataaacagactcttgagaacagggagagcacccaagttaaatgatatcattgaattatagctataagatattttcaattcctcaagtgatgtgtaatt 3872166  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaa 191  Q
    ||  |||||||||||||||||||||   | ||||||||| ||||  ||| ||||||||||| | || |||||||||||||||| |||||||    
T  3872165 gtccaagtattcatgaggaaggaatgttagattctcacagttacatattatgagaaatttctacgtatttggtagaccgtctgctgggaaa 3872075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 6 - 252
Target Start/End: Complemental strand, 10079814 - 10079568
Alignment:
Q  6 aacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaa 105  Q
    |||| ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||  ||||| || |||  |    
T  10079814 aacatactcttgaggatagggagagatcccaaggtaaatgatatcattgaattacagctataagatattgttaattcctcaagatatgtggaattgtcca 10079715  T
Q  106 agtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatgg 205  Q
    ||||||||||||||||||| || | ||||||||| ||||| ||| |||||||||||||||| ||||| |||||| || ||||||||||| |  || |||     
T  10079714 agtattcatgaggaaggaactctagattctcacagttactgattatgagaaatttcaaggtgtttggaagaccgcctattgggaaagacatcggagatga 10079615  T
Q  206 aaagtcatctatggtaaactttcgaagagaatagagagggagcatca 252  Q
    |||  | |||||||| |||||| ||||||| || | ||||| |||||    
T  10079614 aaaaccgtctatggtcaacttttgaagagagtaaaaagggaacatca 10079568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 10186784 - 10186596
Alignment:
Q  6 aacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaa 105  Q
    |||| ||||||||||| ||||||||  |||||||||||||| ||||||||||||||||||||||||||| | |||||||| ||  ||||| || |||  |    
T  10186784 aacatactcttgaggatagggagagatcccaaggtaaatgatatcattgaattacagctataagatattgttaattcctcaagatatgtggaattgtcca 10186685  T
Q  106 agtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagac 194  Q
    ||||||||||||||||||| || | ||||||||| ||||||||| |||||||||||||||| ||||| |||| | || |||||||||||    
T  10186684 agtattcatgaggaaggaactctagattctcacagttactaattatgagaaatttcaaggtgtttggaagactgcctattgggaaagac 10186596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 11489322 - 11489499
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    |||| |||| ||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||||||||||||||| || ||  ||||||||      
T  11489322 caataaacagactcttgaggacagggagagcgcccaaggtaaacgatatcattgaattacaactataagatattttcaattcttcaagcgatgtgtaatg 11489421  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagacc 178  Q
     || |||||||||| ||| ||||| || | | ||||||| ||||| ||| ||||| | |||||||| |||||||||||    
T  11489422 ttgcaagtattcattaggtaggaactctagactctcacagttactgattgtgagagacttcaaggtgtttggtagacc 11489499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 237
Target Start/End: Original strand, 4058211 - 4058415
Alignment:
Q  33 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 132  Q
    ||||||||||||||  ||||||||||||| ||||  ||||||| ||| | ||| ||  || ||||||||||| || ||||||  |||| ||| |||||||    
T  4058211 cccaaggtaaatgatgtcattgaattacaactatcggatatttccaaattctcaagtgatttgtaactgtgagagaattcatagggaatgaactccaaat 4058310  T
Q  133 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 232  Q
    |   |||||| |  ||| | ||| ||| |||||||||||| |||| |||| | ||||| || |||||| |||||| ||| | ||  |||| |||||||||    
T  4058311 tacgacaattccatattataagagattgcaaggtttttggaagactgtctctcgggaaggatgttagagatggaatgtcttttaaagtaatctttcgaag 4058410  T
Q  233 agaat 237  Q
    |||||    
T  4058411 agaat 4058415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 242
Target Start/End: Original strand, 4077882 - 4078030
Alignment:
Q  94 tgtaactgtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaaga 193  Q
    ||||||||||| || |||||| ||||| ||| ||||||||  ||||||| |  ||| ||||| |||  ||||||||||| |||| |||| |  |||| ||    
T  4077882 tgtaactgtgagagaattcataaggaatgaactccaaattaccacaattccatattatgagagattgtaaggtttttggcagactgtctatcaggaagga 4077981  T
Q  194 cgttagaaatggaaagtcatctatggtaaactttcgaagagaatagaga 242  Q
     |||||| |||||| ||| | || ||||| |||||||||| ||| ||||    
T  4077982 tgttagagatggaatgtcttttaaggtaatctttcgaagataattgaga 4078030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 35 - 200
Target Start/End: Original strand, 4105295 - 4105460
Alignment:
Q  35 caaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaattc 134  Q
    ||||||||| ||  ||||||||||||| ||||   |||||| ||| | ||||||  |  |||||||||||||| | |||| |||||||||||| | |||     
T  4105295 caaggtaaaagatgtcattgaattacaactatcgaatatttccaaattctcgagtgacttgtaactgtgaaagaactcataaggaaggaattcaagattg 4105394  T
Q  135 tcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 200  Q
     ||||||| |  ||||||||| | |  |||||||| || ||||| ||| | ||||| |||||||||    
T  4105395 ccacaattccatattttgagagagtgtaaggttttgggaagaccatctctcgggaaggacgttaga 4105460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 17313901 - 17313644
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    |||| |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||| |||||||||||    
T  17313901 caataaacagactcttgaggacagggagagcacccaaggtaaatgatatcattgaattacagttataagatattctcaattcctcgagcaatgtgtaact 17313802  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 200  Q
    |||||  || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  17313801 gtgaagataatcatga---aggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtaaaccatctgttgggaaagacgtcaga 17313705  T
Q  201 aatggaaagtcatctatggtaaactttcgaagagaatagagagggagcatcaattggctga 261  Q
    ||||||||||| | |||||| |||| | |||||||||||||||||||||||| ||||||||    
T  17313704 aatggaaagtcgtatatggtcaactgtagaagagaatagagagggagcatcagttggctga 17313644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 255
Target Start/End: Complemental strand, 13935851 - 13935629
Alignment:
Q  33 cccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaat 132  Q
    ||||||||||| || ||||| |||||||| || |  ||||||| ||| | ||||||  || ||||||||| | || |||||| ||||| ||| |||||||    
T  13935851 cccaaggtaaacgatatcatcgaattacaactgttggatatttccaaattctcgagtgatttgtaactgtcagagaattcataaggaatgaactccaaat 13935752  T
Q  133 tctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatggaaagtcatctatggtaaactttcgaag 232  Q
    |  ||||||| |  ||| ||||| |||  ||||||||||| |||| |||| | ||||  || |||||| |||||| ||| | || ||||| |||||||||    
T  13935751 taccacaattccatattatgagagattgtaaggtttttggcagactgtctctcgggagggatgttagagatggaatgtcttttaaggtaatctttcgaag 13935652  T
Q  233 agaatagagagggagcatcaatt 255  Q
    ||||| ||||  || ||||||||    
T  13935651 agaattgagactgatcatcaatt 13935629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 5990653 - 5990468
Alignment:
Q  6 aacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaa 105  Q
    |||| |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||  |    
T  5990653 aacagactcttgaggacagggagagcacccaaggtgaatgatatcattgaattacaactataagatattttcaattcctcaagtgatgtgtaactgtcca 5990554  T
Q  106 agtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaa 191  Q
     |||||||||||||||||| || | ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  5990553 ggtattcatgaggaaggaactctagattctcacagttactgattttgagaaatttcaaggtttttggtagaccgtctgttgggaaa 5990468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 18390184 - 18389929
Alignment:
Q  6 aacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaactgtgaa 105  Q
    |||| ||||||||||| ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||  |||||||| |||| |    
T  18390184 aacagactcttgaggatagggagagcacccaaagtaaatgatatcattgaattacagctataagatattttcaattcctcaagcgatgtgtaattgtgca 18390085  T
Q  106 agtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttagaaatgg 205  Q
    | |||||||||| | |||| || | |||||  ||||| || ||| |||||| ||||||||||||||||||||| ||||| ||||||||| ||||| || |    
T  18390084 aatattcatgagaatggaactctagattctggcaattgctgattatgagaactttcaaggtttttggtagaccttctgtagggaaagacattagagattg 18389985  T
Q  206 aaagtcatctatggtaaactttcgaagagaatagagagggagcatcaattggctga 261  Q
    |||  | ||||||||||| | ||||||||||| |||||| ||||||||||||||||    
T  18389984 aaaaccgtctatggtaaattgtcgaagagaattgagaggaagcatcaattggctga 18389929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 2807 - 3043
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||| |||||||||||||| |||| ||| ||  |||||||| |    
T  2807 caataaacaaactattgaggacagggagagcgcccaaggcaaatgatatcattgaattacaactataagatatttttaatttctcaagtgatgtgtaatt 2906  T
Q  101 gtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagacgttaga 200  Q
    ||| |||||||||||||||||||| || | |||||||||  |||| ||| |||||| ||||||||||||||| |||||||||| |||||||||| |  ||    
T  2907 gtgcaagtattcatgaggaaggaactctagattctcacagctactgattatgagaactttcaaggtttttggaagaccgtctggtgggaaagacatcgga 3006  T
Q  201 aatggaaagtcatctatggtaaactttcgaagagaat 237  Q
     |||||||  | | |||||| |||| |||||||||||    
T  3007 gatggaaaaccgtgtatggtcaactgtcgaagagaat 3043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 16448920 - 16448682
Alignment:
Q  1 caatgaacaaactcttgaggacagggagagcacccaaggtaaatgaaatcattgaattacagctataagatattttcaattcctcgaggaatgtgtaact 100  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||| | |||||||| ||  ||||  || |    
T  16448920 caatgaacaaactcttgaggacagggagagcgcccaaggtaaatgataccattgaattacagctataagatattgttaattcctcaagagatgtaaaatt 16448821  T
Q  101 gtga------aagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttttggtagaccgtctgttgggaaagac 194  Q
    ||||      ||||| ||||||||| |||| || | ||||||||||||||| ||| | |||||||||||||||||  |||||||||||||||||||||||    
T  16448820 gtgattgcgcaagtagtcatgaggagggaactctagattctcacaattactgattatcagaaatttcaaggttttctgtagaccgtctgttgggaaagac 16448721  T
Q  195 gttagaaatggaaagtcatctatggtaaactttcgaaga 233  Q
     |  || ||| |||| |||||||||| | || |||||||    
T  16448720 atcggagatgaaaagccatctatggttagctgtcgaaga 16448682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 42506594 - 42506504
Alignment:
Q  79 attcctcgaggaatgtgtaactgtgaaagtattcatgaggaaggaattccaaattctcacaattactaattttgagaaatttcaaggtttt 169  Q
    |||||| ||| ||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||| ||| |||||| ||||||||||||    
T  42506594 attccttgagcaatgtgtaattgtgcaagtattcatgagaaaggaattccaaattctcgcaattacttattatgagaactttcaaggtttt 42506504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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