View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_60 (Length: 250)
Name: NF17082_low_60
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_60 |
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| [»] scaffold0635 (1 HSPs) |
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Alignment Details
Target: scaffold0635 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0635
Description:
Target: scaffold0635; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 2689 - 2567
Alignment:
| Q |
62 |
acaacaaagatttctcgacacgaaccatttgctgaagctacaaccttgagtgccttggtgcgacatttttgacatctcatgtgaaccctcatcacaatct |
161 |
Q |
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||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
2689 |
acaacaaagatttttcgacacgaaccgtttgctccagctacaacctcgagtgccttggtgcgacacttttgacatctcatgtgaaccctcatcacaatct |
2590 |
T |
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| Q |
162 |
tttgctgcaaaaacaatcacatt |
184 |
Q |
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||||||||||| ||||||||||| |
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| T |
2589 |
tttgctgcaaacacaatcacatt |
2567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 62 - 184
Target Start/End: Original strand, 10106095 - 10106217
Alignment:
| Q |
62 |
acaacaaagatttctcgacacgaaccatttgctgaagctacaaccttgagtgccttggtgcgacatttttgacatctcatgtgaaccctcatcacaatct |
161 |
Q |
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||||||||||||| |||||||||||| |||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
10106095 |
acaacaaagatttttcgacacgaaccgtttgctccagctacaacctcgagtgccttggtgcgacacttttgacatctcatgtgaaccctcatcacaatct |
10106194 |
T |
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| Q |
162 |
tttgctgcaaaaacaatcacatt |
184 |
Q |
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||||||||||| ||||||||||| |
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| T |
10106195 |
tttgctgcaaacacaatcacatt |
10106217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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