View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_63 (Length: 249)
Name: NF17082_low_63
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 18618287 - 18618055
Alignment:
| Q |
1 |
ttagatagttggactgattaatattaccttacacaaagccatgaagggagcatcagtgactctatcaccaagtccaatatctggcttttcatcaccaaaa |
100 |
Q |
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| T |
18618287 |
ttagatagttggactgattaatattaccttgcacaaagccatgaagggagcatcagtgactctatcaccaagtccaatatcaggcttttcatcaccaaaa |
18618188 |
T |
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| Q |
101 |
gttttcttaagaacttgagctttcttatctccaacaagtattccaggtttacaaatcaatccagtagctctccctttataactagcaatttcagttccca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
18618187 |
gttttcttaagaacttgagctttcttatctccaacaagtattccaggtttacaaatcaatccagtagctcttcccttataactagcaatttcagttccca |
18618088 |
T |
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| Q |
201 |
aaaccatatcagcccccaaaaattccttcaaaa |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
18618087 |
aaaccatatcagcccccaaaaattccttcaaaa |
18618055 |
T |
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