View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_71 (Length: 238)
Name: NF17082_low_71
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_71 |
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| [»] scaffold0543 (1 HSPs) |
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| [»] scaffold0492 (1 HSPs) |
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Alignment Details
Target: scaffold0543 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0543
Description:
Target: scaffold0543; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 3746 - 3544
Alignment:
| Q |
22 |
ctctcattcaacctcaaatgtcgcttccgctatttcaagtacgatatcaccaaatttgttactaatgtagttcaacgaggagttcaaaacttaagcattg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3746 |
ctctcattcaacctcaaatgtcgcttccgctatttcaagtacgatatcaccaaatttgttactaatgtagttcaacgaggagttcaaaacttaagcattg |
3647 |
T |
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| Q |
122 |
atctattattccatggcagagtccctacttgcgttctaactacaaaaaccttggctgtactcaaattgaagaggttaacatttgatgttccacacgttca |
221 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3646 |
atctattattccacggcagagtccctacttgcgttctaactacaaaaaccttggctgtactcaaattgaagaggttaacatttgatgttccacacgttca |
3547 |
T |
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| Q |
222 |
tct |
224 |
Q |
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||| |
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| T |
3546 |
tct |
3544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0492 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0492
Description:
Target: scaffold0492; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 22 - 224
Target Start/End: Complemental strand, 5292 - 5090
Alignment:
| Q |
22 |
ctctcattcaacctcaaatgtcgcttccgctatttcaagtacgatatcaccaaatttgttactaatgtagttcaacgaggagttcaaaacttaagcattg |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5292 |
ctctcattcaacctcaaatgtcgcttccgctatttcaagtacgatatcaccaaatttgttactaatgtagttcaacgaggagttcaaaacttaagcattg |
5193 |
T |
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| Q |
122 |
atctattattccatggcagagtccctacttgcgttctaactacaaaaaccttggctgtactcaaattgaagaggttaacatttgatgttccacacgttca |
221 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5192 |
atctattattccacggcagagtccctacttgcgttctaactacaaaaaccttggctgtactcaaattgaagaggttaacatttgatgttccacacgttca |
5093 |
T |
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| Q |
222 |
tct |
224 |
Q |
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||| |
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| T |
5092 |
tct |
5090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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