View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_72 (Length: 234)
Name: NF17082_low_72
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_72 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 9966393 - 9966592
Alignment:
| Q |
19 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacccatataaacacaaatcttgaacacaccatttccacaaaactaccaaaatg |
118 |
Q |
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| T |
9966393 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacacatataaacacaaatcttaaacataccatttccacaaaactaccaaaatg |
9966492 |
T |
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| Q |
119 |
gtcactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccgtacatagtagttgatttct |
218 |
Q |
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| T |
9966493 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtctgtacatagtagttgatttct |
9966592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 9936229 - 9936422
Alignment:
| Q |
19 |
atcccaaactccaccgttcatctttcttataccatgcatgaaataatacccatataaacacaaatcttgaacacaccatttccacaaaactaccaaaatg |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
9936229 |
atcccaaactccaccgtt-----ttcttataccatgcatgaaataatacacatataaacacaaaccttaaacacaccatttccacaaaactaccaaaatg |
9936323 |
T |
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| Q |
119 |
gtcactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccgtacatagtagttgatttc |
217 |
Q |
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| T |
9936324 |
gccactgttagaaaacttatagtagaagtaatagatgcacaaaacctagctcccaaggacggtcatggaacttcaagtccatacatagtaattgatttc |
9936422 |
T |
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