View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_73 (Length: 233)
Name: NF17082_low_73
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_73 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 14340447 - 14340243
Alignment:
| Q |
18 |
gaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340447 |
gaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccatagctaatatcattttgtccaatatcaatggtgtaaatggcttttgagaa |
14340348 |
T |
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| Q |
118 |
atcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggttcagtttttcaccattcacttctttttcat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14340347 |
atcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggttcagtttttcaccattcacttctttttcat |
14340248 |
T |
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| Q |
218 |
ctcac |
222 |
Q |
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|||| |
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| T |
14340247 |
gtcac |
14340243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 18 - 222
Target Start/End: Complemental strand, 3601573 - 3601373
Alignment:
| Q |
18 |
gaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaa |
117 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3601573 |
gaattgaccttctaacttcttcctctgaagagttcggcttctgcagaccatagccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaa |
3601474 |
T |
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| Q |
118 |
atcttcaatccttggaaggccacttctgagaggtggttctgtccctataaataacatcacatatataggttcagtttttcaccattcacttctttttcat |
217 |
Q |
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| T |
3601473 |
atcttcagtccttggaacgccacttctgagaggtggttctgtccctataaatgacatcac----ataggttcagtttttcaccattcacttctttttcat |
3601378 |
T |
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| Q |
218 |
ctcac |
222 |
Q |
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|||| |
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| T |
3601377 |
gtcac |
3601373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 3568575 - 3568467
Alignment:
| Q |
18 |
gaattgaccttttaacttcttcctctgaagagttcggcttctgcagaccataaccaatatcattttgtccaatatcaatggtgtaaatggcttttgagaa |
117 |
Q |
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||||||||||| |||||| |||||||||||| ||||||||||||| | ||||||||||||||| |||||||||| ||||||||||| || ||||| |
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| T |
3568575 |
gaattgaccttctaacttgttcctctgaaga------cttctgcagaccaaagccaatatcattttgtgcaatatcaattgtgtaaatggccttagagaa |
3568482 |
T |
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| Q |
118 |
atcttcaatccttgg |
132 |
Q |
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||||| | ||||||| |
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| T |
3568481 |
atctttagtccttgg |
3568467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 50; Significance: 9e-20; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 76 - 169
Target Start/End: Complemental strand, 1408783 - 1408690
Alignment:
| Q |
76 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccctataaat |
169 |
Q |
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| T |
1408783 |
atcattttgtccaatatcaattgtgtaaagggccttagagaattcctcattccttggaagaccacttttgaaaggtgattctgtccctataaat |
1408690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 1416769 - 1416682
Alignment:
| Q |
76 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
163 |
Q |
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||||||||||||||||||||| ||||||| ||| || |||||||| ||| ||||||||| |||||| |||||| ||||||||||||| |
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| T |
1416769 |
atcattttgtccaatatcaattgtgtaaagggccttagagaaatcctcaggccttggaagaccacttttgagagatggttctgtccct |
1416682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 1411919 - 1411832
Alignment:
| Q |
76 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
163 |
Q |
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| T |
1411919 |
atcattttgtccaatatcaattgtgtaaagggccttagagaagtcctcaggccctggaagaccacttttgagaggcggttccgtccct |
1411832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 163
Target Start/End: Complemental strand, 1421228 - 1421141
Alignment:
| Q |
76 |
atcattttgtccaatatcaatggtgtaaatggcttttgagaaatcttcaatccttggaaggccacttctgagaggtggttctgtccct |
163 |
Q |
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||||||| ||||||||||||| ||||||| ||| | |||| || ||| ||||||||| |||||| |||||| ||||||||||||| |
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| T |
1421228 |
atcatttagtccaatatcaattgtgtaaagggccgtacagaagtcctcaggccttggaagaccacttttgagagatggttctgtccct |
1421141 |
T |
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