View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_79 (Length: 207)
Name: NF17082_low_79
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_79 |
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Alignment Details
Target: chr5 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 4655947 - 4655774
Alignment:
| Q |
16 |
aatattgattcaaccacttctttgtgcattataaacaaaaactcacgctctattcactttgtacaacataaatgtctcttaagttattttgtatatcaaa |
115 |
Q |
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| T |
4655947 |
aatattgattcaaccactt---tgtacattataaacaaaaactcacgctctattcactttgtacaacataaatgtctcttaagttattttgtatatcaaa |
4655851 |
T |
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| Q |
116 |
tgtcttttaagtatattgatatgctgtgtttacccctttagctcacacaataaattacttgatatatgtgacaatct |
192 |
Q |
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| T |
4655850 |
tgtcttttaagtatattgatatgttgtgtttacccctttagctcacacaataaattacttgatatatgtgacaatct |
4655774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 4647502 - 4647329
Alignment:
| Q |
16 |
aatattgattcaaccacttctttgtgcattataaacaaaaactcacgctctattcactttgtacaacataaatgtctcttaagttattttgtatatcaaa |
115 |
Q |
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||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
4647502 |
aatattgattcaaccactt---tgtacattataaacaaaaactcacgctctattcactttgtgcaacataaatgtctcttaagttattttgtatatcaaa |
4647406 |
T |
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| Q |
116 |
tgtcttttaagtatattgatatgctgtgtttacccctttagctcacacaataaattacttgatatatgtgacaatct |
192 |
Q |
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|| || ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
4647405 |
tgcctcttaggtatattgatatgttgtgtttacccctttagctcacacaataaattacttgatatgtgtgacaatct |
4647329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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