View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17082_low_8 (Length: 531)
Name: NF17082_low_8
Description: NF17082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17082_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 1253371 - 1253007
Alignment:
| Q |
14 |
gttttttcttgttgatgaagatctattgtattggctgctacttcattaaaaacaattttatgtaacttttatttgtatggtatgctagttatgttctaaa |
113 |
Q |
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| T |
1253371 |
gttttttcttgttgatgaagatctattgcattggctgctacttcattaaaaacaattttatgtaacttttatttgtatggtatgctagttatgttctaaa |
1253272 |
T |
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| Q |
114 |
gttactatgcttgtcgtttgcatgtgtcatgtcnnnnnnn-------------cgggtcatttggtttcattgaaaacaatgatgggaactaagaaaatg |
200 |
Q |
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| T |
1253271 |
gttactatgcttgtcgtttgcatgtgtcatgtctttttttttttttttttttccgggtcatttggtttcattgaaaacaatgatgggaactaagaaaatg |
1253172 |
T |
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| Q |
201 |
acaacatgaagcattagagtccaataatttgaaaataacatataaacaagtatgtaaatatgcaacattttggaatttctatgcgnnnnnnnctatgtaa |
300 |
Q |
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| T |
1253171 |
acaacatgaagcattagagtccaataatttgaaaataacatataaacaagtatgtaaatattcaacattttggaatttctatgcgaaaaaaactatgtaa |
1253072 |
T |
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| Q |
301 |
ccaatcgtttgaaaatttcttctatatcacaaaagactgcattttagcacctctgtgggtgtgag |
365 |
Q |
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| T |
1253071 |
ccaatcgtttgaaaatttcttgtatatcacaaaagactgcattttagcacctctgtaggtgtgag |
1253007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 420 - 520
Target Start/End: Complemental strand, 1252953 - 1252853
Alignment:
| Q |
420 |
ccattgtattccttgttttgaaagaattatttgatgttaactctgttagtcataagttaacagttggaaaaccttagtttgtctcaaaaacaacaattca |
519 |
Q |
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| T |
1252953 |
ccattgtattccttgttttgaaagaattatttgatgttaactctgttagtcataagttaacagttggaaaaccttagtttgtctcaaaaacaacaattca |
1252854 |
T |
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| Q |
520 |
t |
520 |
Q |
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| T |
1252853 |
t |
1252853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 1244883 - 1244807
Alignment:
| Q |
16 |
tttttcttgttgatgaagatctattgtattggctgctacttcattaaaaacaattttatgtaacttttatttgtatg |
92 |
Q |
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| T |
1244883 |
tttttcttgttgatgaagatatattgcattggccatcacttcattacaaacaattttatgcgacttttgtttgtatg |
1244807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 492
Target Start/End: Original strand, 11006003 - 11006040
Alignment:
| Q |
455 |
gttaactctgttagtcataagttaacagttggaaaacc |
492 |
Q |
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| T |
11006003 |
gttaactctgttagtcataagttaacgattggaaaacc |
11006040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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