View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_10 (Length: 469)
Name: NF17083_high_10
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_10 |
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Alignment Details
Target: chr6 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Original strand, 8594315 - 8594754
Alignment:
| Q |
18 |
atttcaattagtaaaaatgtcttttttcaatataaaaatgtctgttgttacttctaatattcttaatgtgaaactttacaagtcttttttcaattatatg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| |
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| T |
8594315 |
atttcaattagtaaaaatgtcttttttcaatataaaaatgtctgttgttacttctaatattcttaatgtgaaactttaccatttttttttcaattatatg |
8594414 |
T |
|
| Q |
118 |
tgccaagcactagcagtatatggagttcatgccaaggcaaaggataactcgaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaag |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8594415 |
tgccaagcactagcagtatatggagttcatgccaaggcaaaggataactcgaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaag |
8594514 |
T |
|
| Q |
218 |
gcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatatggaatttacatagtgaagcatcaag |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8594515 |
gcaggttgtactttgagttacttatattcaatgacatattttcctctcaattactttaaatcaaggattatatatggaatttacatagtgaagcatcaag |
8594614 |
T |
|
| Q |
318 |
gattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataataccatgtaattcttaaaaggggattctgt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
8594615 |
gattaaaaacatgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataataccatgtaattcttaaaagggtattctgt |
8594714 |
T |
|
| Q |
418 |
agcactatattgtagtggaatttgaacacatcactatttt |
457 |
Q |
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| T |
8594715 |
agcgctatattgtagtggaatttgaacacatcactatttt |
8594754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 163 - 273
Target Start/End: Complemental strand, 8579458 - 8579348
Alignment:
| Q |
163 |
aactcgaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcct |
262 |
Q |
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||||||||||||||||||| || || ||||||||||| |||||||||||| |||||||| |||||| |||||||||| ||| |||||||||||||| || |
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| T |
8579458 |
aactcgaaatgagctgggtgtgcgatgaatcaaaccgtcaacatgaaaaggtaaggcagggtgtactctgagttacttttatgcaatgacatatttttct |
8579359 |
T |
|
| Q |
263 |
ctcaattactt |
273 |
Q |
| |
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|||||||||| |
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| T |
8579358 |
ttcaattactt |
8579348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 8599020 - 8599087
Alignment:
| Q |
168 |
gaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaaggcaggttgtactttgagt |
235 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||||||| |||||| | ||||||| |||| |
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| T |
8599020 |
gaaatgagctgggtgtgtgaggaatcaaaccgtcaacatgaaaaggtaaggcatggtgtacttcgagt |
8599087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 8e-22; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 19868480 - 19868585
Alignment:
| Q |
168 |
gaaatgagctgggtctgtgaggaatcaaaccgccaacatgaaaagacaaggcaggttgtactttgagttacttatattcaatgacatattttcctctcaa |
267 |
Q |
| |
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|||||||||||||| ||||||||||||||||| || |||||||| |||||||| ||||||||||||||||| || |||||||||||||| | |||| |
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| T |
19868480 |
gaaatgagctgggtgtgtgaggaatcaaaccgtcagaatgaaaaggtaaggcagggtgtactttgagttacttttaaacaatgacatatttttccttcaa |
19868579 |
T |
|
| Q |
268 |
ttactt |
273 |
Q |
| |
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|||||| |
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|
| T |
19868580 |
ttactt |
19868585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 328 - 390
Target Start/End: Original strand, 19868746 - 19868807
Alignment:
| Q |
328 |
atgattagcatttgcaagtaagagttattgaataaaaccttgaataaggcaatacaataatac |
390 |
Q |
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|||||||||||||| |||||| ||| ||||| || |||||||||||||||||||||||||| |
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| T |
19868746 |
atgattagcatttggaagtaaaagtaattgagccaa-ccttgaataaggcaatacaataatac |
19868807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 457
Target Start/End: Original strand, 3015643 - 3015672
Alignment:
| Q |
428 |
tgtagtggaatttgaacacatcactatttt |
457 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
3015643 |
tgtagtggaatttgaacacatcactatttt |
3015672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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