View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_13 (Length: 439)
Name: NF17083_high_13
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 52125541 - 52125131
Alignment:
| Q |
17 |
ttgccaactcctttgttagactcaataaaagaagataatctacattggtggtcagatgcaaaaggtatgttcactgtcaaatctgctaacaaataagtcg |
116 |
Q |
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| T |
52125541 |
ttgccaactcctttgttagactcaataaaagaagataatctacattggtggtcagatgcaagaggtatgttcactgtcaaatctgctaacaaataagtcg |
52125442 |
T |
|
| Q |
117 |
taaataacttgtttgatggatctagcttacatgcatttggtgattggtctttagtctggaatttggaggcaccattggtgctaaataatttcattcggag |
216 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52125441 |
taaataacttgtttgatagatctagcttacatgcatttggtgattggtctttagtccggaatttggaggcaccattggtggtaaataatttcattcggag |
52125342 |
T |
|
| Q |
217 |
attgcttgctaactagagcta----agcttgtcacnnnnnnnggcactttgtccttaaaattgcatttgttgtggttcttatggtgaaaattattggcat |
312 |
Q |
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||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
52125341 |
attgcttgctaactagagctaagctagcttgtcacaaaaaaaggcactttgtccttaaaattgcatttgttgtggttcttatggtgaaaattcttggcat |
52125242 |
T |
|
| Q |
313 |
ctttttgttacttgtcgtattgctatagatacttgaaaataactcaaaatatgggatttgatagaaccgcatatttttcatgcccatggaattatactat |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52125241 |
ctttttgttacttgtcgtattgctatagatacttgaaaataactcaaaatatgggatttgatagaaccgcatatttttcatgcccatggaattatactat |
52125142 |
T |
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| Q |
413 |
gaggagatatc |
423 |
Q |
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| T |
52125141 |
gaggagatatc |
52125131 |
T |
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