View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17083_high_14 (Length: 423)

Name: NF17083_high_14
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17083_high_14
NF17083_high_14
[»] chr2 (3 HSPs)
chr2 (17-411)||(18913181-18913576)
chr2 (17-360)||(18908483-18908828)
chr2 (17-279)||(18920518-18920784)
[»] scaffold0464 (1 HSPs)
scaffold0464 (17-405)||(8112-8498)
[»] chr7 (14 HSPs)
chr7 (17-405)||(19779653-19780041)
chr7 (178-394)||(19358119-19358336)
chr7 (17-377)||(19887372-19887730)
chr7 (184-303)||(14076847-14076966)
chr7 (184-303)||(14386875-14386994)
chr7 (339-402)||(19722392-19722455)
chr7 (261-318)||(19350817-19350874)
chr7 (263-316)||(22524927-22524980)
chr7 (77-153)||(19722135-19722211)
chr7 (88-149)||(19358032-19358093)
chr7 (263-310)||(21218467-21218514)
chr7 (265-306)||(15571643-15571684)
chr7 (183-220)||(29453958-29453995)
chr7 (188-220)||(29895645-29895677)
[»] chr6 (4 HSPs)
chr6 (181-405)||(14749585-14749810)
chr6 (184-306)||(6921095-6921217)
chr6 (265-306)||(6942712-6942753)
chr6 (265-306)||(6954264-6954305)
[»] chr3 (2 HSPs)
chr3 (17-405)||(12734441-12734809)
chr3 (17-405)||(32578494-32578884)
[»] chr4 (3 HSPs)
chr4 (263-308)||(2911333-2911378)
chr4 (263-303)||(53775099-53775139)
chr4 (182-211)||(3565936-3565965)
[»] scaffold0128 (2 HSPs)
scaffold0128 (263-308)||(4401-4446)
scaffold0128 (263-311)||(25882-25930)
[»] chr8 (1 HSPs)
chr8 (258-303)||(27618720-27618765)
[»] chr5 (1 HSPs)
chr5 (263-308)||(42298375-42298420)


Alignment Details
Target: chr2 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 17 - 411
Target Start/End: Complemental strand, 18913576 - 18913181
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18913576 aattcctcaaaattagttttcaaaatcttcatattgattatggcattggtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 18913477  T
Q  117 tgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaa---ctatcaccgccaacatgcaattctctataattggagagataataaa 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |   |   ||||||||||||||||||||||||||||||||||||||||||||||    
T  18913476 tgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcattcatggctatcaccgccaacatgcaattctctataattggagagataataaa 18913377  T
Q  214 gttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttcaat 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  18913376 gttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttctcttcaat 18913277  T
Q  314 tatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgttttgggttgtttttatatattattataacttaagaat 411  Q
     |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||    
T  18913276 ga--tttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgtttttggttgttttaatatattattataacttaagaat 18913181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 17 - 360
Target Start/End: Complemental strand, 18908828 - 18908483
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18908828 aattcctcaaaattagttttcaaaatcttcatattgattatggcattggtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 18908729  T
Q  117 tgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaa---ctatcaccgccaacatgcaattctctataattggagagataataaa 213  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |   |   ||||||||||| |||||||||||| |||||||||||||||||||||    
T  18908728 tgagagtagcaacacactggtaatggcaagcaatcaacgaggcctcattcatggctatcaccgccgacatgcaattctttataattggagagataataaa 18908629  T
Q  214 gttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttcaat 313  Q
    ||||| ||||||||||||| |||  | ||||  |||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  18908628 gttgaacaaattgcaactagcaaacaaatatcatggtttaataccaatgattatgttgaaagcttggtttcaacctcttgaaagtaagtttttcttcgat 18908529  T
Q  314 tatttttaattgttctacttaattat-aagtgttttataatctctgaa 360  Q
     |  ||||||||||||| || ||| | ||||||||||  |||||||||    
T  18908528 ga--tttaattgttctaattgattttgaagtgttttaagatctctgaa 18908483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 18920784 - 18920518
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18920784 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 18920685  T
Q  117 tgaga-gtagcaacacactgataatggcaagcaatcaacgaggcctaacgaa---ctatcaccgccaacatgcaattctctataattggagagataataa 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| |   |   |||| |||||||||||||||||||||||||||||||||| |||||    
T  18920684 tgagacgtagcaacacactgataatggcaagcaatcaacgaggcctcattcatggctataaccgccaacatgcaattctctataattggagagaaaataa 18920585  T
Q  213 agttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttg 279  Q
    ||||||||||||||||||| ||||| | ||| ||||||||||||| |||||||||||||||||||||    
T  18920584 agttgagcaaattgcaacttacaatcaaataatgtggtttcatacaaagaattatgttgaaagcttg 18920518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 8112 - 8498
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    |||| |||||||||||||||||  ||||||| |||||||||||||||||||||   || |  |||  | |||||||||||||||| || || |   | ||    
T  8112 aatttctcaaaattagttttcaggatcttcaaattgattatggcattagtgattcactagagtatggttctcaattgttcttgtttccgttgtacctctc 8211  T
Q  117 tgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaact-atcaccgccaacatgcaattctctataattggagagataataaagt 215  Q
    |||||||  ||||||||| ||||||||||||||||||| |||| ||  |   | || |  ||||   ||||||| ||||||||||||||||||| |  ||    
T  8212 tgagagtgacaacacacttataatggcaagcaatcaacaaggc-tatggtgatgataaaagcca---tgcaattatctataattggagagataaaagggt 8307  T
Q  216 tgagcaaattgcaacta---acaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttcaa 312  Q
    ||||||||||  | ||    |||||   ||| |||||||||| |||| | ||||| |||||||||| || |||||||||||||||||||||| |||| ||    
T  8308 tgagcaaattaaatctcttgacaatgtaataatgtggtttcaaaccagggattattttgaaagcttagtttcaacctcttgaaagtaagtttctctttaa 8407  T
Q  313 ttatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgttttgggttgtttttatatattattataactt 405  Q
    | ||||  ||| |||||| |||||| |||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||    
T  8408 taattt--aatagttctaattaattttaagcgttttataatctctaaattgaataagtttgttttgggttgtttttatatattattatgactt 8498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 405
Target Start/End: Original strand, 19779653 - 19780041
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    ||||||||||||||||||||||  | ||||| |||||||||||||||||||||   || |  |||  | |||||||||  ||||  ||||| |   ||||    
T  19779653 aattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgattcactggattatggttctcaattgtatttgtatccattgtacctttc 19779752  T
Q  117 tgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaac--tatcaccgccaacatgcaattctctataattggagagataataaag 214  Q
    |||||||  ||||||||| ||||||||||||||||||  |||||  ||||    ||| ||  |||   ||||||||||||||||||||||||||| |  |    
T  19779753 tgagagtgacaacacacttataatggcaagcaatcaagaaggcc--acgatggttatgacaacca---tgcaattctctataattggagagataaaacgg 19779847  T
Q  215 ttgagcaaattgcaacta---acaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttca 311  Q
    | ||||||||| || ||    ||||| | ||||||||||||||||||||| |||||||||||||||| || ||||||| |||| ||||||||| ||||||    
T  19779848 tagagcaaattacatctgttgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaaccttttgagagtaagtttctcttca 19779947  T
Q  312 attatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgttttgggttgt--ttttatatattattataactt 405  Q
    || |  ||||| ||||  | ||||||  |||| ||||||||||  |||| |||||||||||||||||||||||  || ||||||||||||||||||    
T  19779948 atga--tttaactgtttgaattaatttgaagtattttataatcattgaactgaatgagtttgttttgggttgttcttatatatattattataactt 19780041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 178 - 394
Target Start/End: Original strand, 19358119 - 19358336
Alignment:
Q  178 caacatgcaattctctataattggagagataataaagttgagcaaattgcaact---aacaataacatattgtggtttcataccaagaattatgttgaaa 274  Q
    |||||||||||||||||||||||||||||||| | |||  |||| | | || ||   |||||||| |||| ||||||| |||||||  ||||||||||||    
T  19358119 caacatgcaattctctataattggagagataaaagagtaaagcatactacatctgtcaacaataaaatatggtggttttataccaaagattatgttgaaa 19358218  T
Q  275 gcttggtatcaacctcttgaaagtaagtttttcttcaattatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgt 374  Q
    |||| || ||| |||||||||||||||||| ||||| || |  ||||||||||| | || |||  |||| |||||||||||||||| |||||||||||||    
T  19358219 gcttagtttcatcctcttgaaagtaagtttctcttctatga--tttaattgttcaaatttatttaaagttttttataatctctgaactgaatgagtttgt 19358316  T
Q  375 tttgggttgtttttatatat 394  Q
    ||  ||||||| ||||||||    
T  19358317 ttctggttgttcttatatat 19358336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 377
Target Start/End: Complemental strand, 19887730 - 19887372
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    ||||||||||||||||||||||  | ||||| |||||||||||||||||||||   || |  |||  | |||||||||  ||||  ||||| |   ||||    
T  19887730 aattcctcaaaattagttttcaggaccttcaaattgattatggcattagtgattcactggactatggttctcaattgtatttgtatccattttacctttc 19887631  T
Q  117 tgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaac--tatcaccgccaacatgcaattctctataattggagagataataaag 214  Q
    |||||||  ||||||||| ||||||||||||||||||| ||||   ||||    ||| ||  |||   ||||||| ||||||| ||||||||||| |  |    
T  19887630 tgagagtgacaacacacttataatggcaagcaatcaacaaggct--acgatggttatgacaacca---tgcaattatctataactggagagataaaacgg 19887536  T
Q  215 ttgagcaaattgcaacta---acaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttca 311  Q
    | ||||||||| || ||    ||||| | ||||||||||||||||||||| |||||||||||||||| || |||| || |||| ||||||||| | ||||    
T  19887535 tagagcaaattacatctgttgacaatgaaatattgtggtttcataccaaggattatgttgaaagcttagtttcaatcttttgagagtaagtttctattca 19887436  T
Q  312 attatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgtttt 377  Q
    || |  ||||||||||  | |||||| ||||||||||||||||  |||| ||||||||||||||||    
T  19887435 atga--tttaattgtttgaattaattttaagtgttttataatcattgaactgaatgagtttgtttt 19887372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 14076847 - 14076966
Alignment:
Q  184 gcaattctctataattggagagataataaagttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttggtat 283  Q
    |||||| ||||||||||||||||||||| |||  ||  ||||  || || |||||  || |||||||| ||| |||||||||||||||||||||||||||    
T  14076847 gcaattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtat 14076946  T
Q  284 caacctcttgaaagtaagtt 303  Q
    | || | | |||||||||||    
T  14076947 cgacttttagaaagtaagtt 14076966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 303
Target Start/End: Original strand, 14386875 - 14386994
Alignment:
Q  184 gcaattctctataattggagagataataaagttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttggtat 283  Q
    |||||| ||||||||||||||||||||| |||  ||  ||||  || || |||||  || |||||||| ||| |||||||||||||||||||||||||||    
T  14386875 gcaattatctataattggagagataatagagtaaagagaattaaaaataccaatagaattttgtggttgcattccaagaattatgttgaaagcttggtat 14386974  T
Q  284 caacctcttgaaagtaagtt 303  Q
    | || | | |||||||||||    
T  14386975 cgacttttagaaagtaagtt 14386994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 339 - 402
Target Start/End: Original strand, 19722392 - 19722455
Alignment:
Q  339 taagtgttttataatctctgaagtgaatgagtttgttttgggttgtttttatatattattataa 402  Q
    |||||||||| ||||||||||| |||||| ||||||||||| ||||||| ||||| ||||||||    
T  19722392 taagtgttttgtaatctctgaactgaatgtgtttgttttggtttgttttaatataatattataa 19722455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 261 - 318
Target Start/End: Complemental strand, 19350874 - 19350817
Alignment:
Q  261 gaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttcaattattt 318  Q
    |||||||||||||||||| || |||||||||||||||||||||| |||| ||| ||||    
T  19350874 gaattatgttgaaagcttagtttcaacctcttgaaagtaagtttctctttaatgattt 19350817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 263 - 316
Target Start/End: Complemental strand, 22524980 - 22524927
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttcaattat 316  Q
    ||||||||||||||||||| ||||| ||||||||||||||| ||||||| ||||    
T  22524980 attatgttgaaagcttggtttcaacttcttgaaagtaagttcttcttcagttat 22524927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 19722135 - 19722211
Alignment:
Q  77 catattatgctcaattgttcttgttaccattatgtgtttctgagagtagcaacacactgataatggcaagcaatcaa 153  Q
    ||||| || ||||||||||| |||| ||||| || ||||| |||||||| || ||||| ||||||||||||||||||    
T  19722135 catatgattctcaattgttcctgttcccattgtgcgtttccgagagtaggaatacactaataatggcaagcaatcaa 19722211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 149
Target Start/End: Original strand, 19358032 - 19358093
Alignment:
Q  88 caattgttcttgttaccattatgtgtttctgagagtagcaacacactgataatggcaagcaa 149  Q
    ||| ||||| | |||||||| |||||||||||||||| | ||||||||||||||||| ||||    
T  19358032 caaatgttcctattaccattgtgtgtttctgagagtaacgacacactgataatggcatgcaa 19358093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 263 - 310
Target Start/End: Complemental strand, 21218514 - 21218467
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttc 310  Q
    ||||||| ||||||||||| ||||| ||||||||||||||| ||||||    
T  21218514 attatgtcgaaagcttggtttcaacttcttgaaagtaagttcttcttc 21218467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 15571684 - 15571643
Alignment:
Q  265 tatgttgaaagcttggtatcaacctcttgaaagtaagttttt 306  Q
    |||||||||||||||||||| || || |||||||||||||||    
T  15571684 tatgttgaaagcttggtatcgacttcctgaaagtaagttttt 15571643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Complemental strand, 29453995 - 29453958
Alignment:
Q  183 tgcaattctctataattggagagataataaagttgagc 220  Q
    ||||||||||||||| ||||||||||||||||| ||||    
T  29453995 tgcaattctctataactggagagataataaagtagagc 29453958  T

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Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 220
Target Start/End: Original strand, 29895645 - 29895677
Alignment:
Q  188 ttctctataattggagagataataaagttgagc 220  Q
    |||||||||||||||||||||||||||| ||||    
T  29895645 ttctctataattggagagataataaagtagagc 29895677  T

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Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 181 - 405
Target Start/End: Original strand, 14749585 - 14749810
Alignment:
Q  181 catgcaattctctataattggagagataataaagttgagcaaattgcaacta---acaataacatattgtggtttcataccaagaattatgttgaaagct 277  Q
    ||||||||| |||||||||||| |||||| |  ||||| |||||| || ||    ||||| | |||||||||||| |||||||| ||| |||||||||||    
T  14749585 catgcaattatctataattggatagataaaagggttgaacaaattacatctggtgacaatgaaatattgtggttttataccaaggattttgttgaaagct 14749684  T
Q  278 tggtatcaacctcttgaaagtaagtttttcttcaattatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgtttt 377  Q
    |  | |||| ||||||||||||||||| |||||||| ||||  |||| ||  | |||||| ||||||||||||||||  |||| ||||||||||||||||    
T  14749685 taatttcaagctcttgaaagtaagtttctcttcaatgattt--aattttttgaattaattttaagtgttttataatcattgaactgaatgagtttgtttt 14749782  T
Q  378 gggttgtttttatatattattataactt 405  Q
     |||||||||||||||||||||||||||    
T  14749783 cggttgtttttatatattattataactt 14749810  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 184 - 306
Target Start/End: Complemental strand, 6921217 - 6921095
Alignment:
Q  184 gcaattctctataattggagagataataaagttgagcaaattgcaactaacaataacatattgtggtttcataccaagaattatgttgaaagcttggtat 283  Q
    ||||||||||||||||||| |||||||| ||   ||  ||||| || || |||||| || ||||||||   | |||||   |||||||||||||||||||    
T  6921217 gcaattctctataattggaaagataatagagcaaagataattgaaagtaccaataaaattttgtggttcactgccaagggatatgttgaaagcttggtat 6921118  T
Q  284 caacctcttgaaagtaagttttt 306  Q
    | || ||||||||||||||||||    
T  6921117 cgacttcttgaaagtaagttttt 6921095  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 6942753 - 6942712
Alignment:
Q  265 tatgttgaaagcttggtatcaacctcttgaaagtaagttttt 306  Q
    ||||||||||||||||||||||| ||||||||||||||||||    
T  6942753 tatgttgaaagcttggtatcaacttcttgaaagtaagttttt 6942712  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Complemental strand, 6954305 - 6954264
Alignment:
Q  265 tatgttgaaagcttggtatcaacctcttgaaagtaagttttt 306  Q
    |||||||||||||||||||| || ||||||||||| ||||||    
T  6954305 tatgttgaaagcttggtatcgacttcttgaaagtatgttttt 6954264  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 12734809 - 12734441
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatgctcaattgttcttgttaccattatgtgtttc 116  Q
    |||| |||||||||||||||||  ||||||| |||||||||||||| ||||||   || | ||||  | |||||||||||||||| || || |   ||||    
T  12734809 aatttctcaaaattagttttcaggatcttcaaattgattatggcatcagtgatttactggaatatggttctcaattgttcttgtttccgttgtacctttc 12734710  T
Q  117 tgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaactatcaccgccaacatgcaattctctataattggagagataataaagtt 216  Q
    |||||||  ||||||||| ||||||||||||||||||| | ||                     ||||||||| ||||||||||||||||||| |  |||    
T  12734709 tgagagtgacaacacacttataatggcaagcaatcaaccaagc---------------------catgcaattatctataattggagagataaaagggtt 12734631  T
Q  217 gagcaaattgcaac---taacaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttcaat 313  Q
    || ||||||  | |   | |||||   ||| |||||||||| |||| | ||||| |||||||||| || |||||||||||||||||||||| ||||||||    
T  12734630 gaccaaattaaatctcttgacaatgtaataatgtggtttcaaaccagggattattttgaaagcttagtttcaacctcttgaaagtaagtttctcttcaat 12734531  T
Q  314 tatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgagtttgttttgggttgtttttatatattattataactt 405  Q
     |  |||||| |||||| |||||| |||| |||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| ||||    
T  12734530 ga--tttaatagttctaattaattttaagcgttttataatctctaaattgaataagtttgttttgggttgtttttatatattattatgactt 12734441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 17 - 405
Target Start/End: Complemental strand, 32578884 - 32578494
Alignment:
Q  17 aattcctcaaaattagttttcaaaatcttcatattgattatggcattagtgatagccttgcatattatg---ctcaattgttcttgttaccattatgtgt 113  Q
    |||||||||| |||||||||||  | ||||| |||||||||||||||||||||   || | |||| |||   |||||||||||||||  ||||| |   |    
T  32578884 aattcctcaagattagttttcaggaccttcaaattgattatggcattagtgattcactggaatatgatggttctcaattgttcttgtatccattgtacct 32578785  T
Q  114 ttctgagagtagcaacacactgataatggcaagcaatcaacgaggcctaacgaactatcaccgccaacatgcaattctctataattggagagataataaa 213  Q
    ||| ||||||  |  |||||| ||||||||||||||||||| ||||   | || |  |||   | | ||||||||||||||| |||||||| |||| |      
T  32578784 ttccgagagtgacggcacacttataatggcaagcaatcaacaaggct--atga-cggtcatgacaaccatgcaattctctatgattggagaaataaaagg 32578688  T
Q  214 gttgagcaaattgcaacta---acaataacatattgtggtttcataccaagaattatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttc 310  Q
    |||||||||||| || ||    || || | |||||||||||||||||||||  |||||||||||||||  | ||||||| |||| ||||||||| |||||    
T  32578687 gttgagcaaattacatctgttgacgatgaaatattgtggtttcataccaaggcttatgttgaaagcttattttcaaccttttgagagtaagtttctcttc 32578588  T
Q  311 aattatttttaattgttctacttaattataagtgttttataatctctgaagtgaatgag-tttgttttgggttgtttttatatattattataactt 405  Q
    ||| |  ||||||||||  | ||||||  |||||||||||||||  | || ||||| || ||| ||||||||||||||||||||||||||||||||    
T  32578587 aatga--tttaattgtttgaattaatttcaagtgttttataatcattaaactgaattagtttttttttgggttgtttttatatattattataactt 32578494  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 2911333 - 2911378
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtttttct 308  Q
    ||||||| ||||||||||||||||| ||||||||||||||| ||||    
T  2911333 attatgtagaaagcttggtatcaacttcttgaaagtaagttcttct 2911378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 303
Target Start/End: Original strand, 53775099 - 53775139
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtt 303  Q
    ||||||||||||||||||||||||| | |||||||||||||    
T  53775099 attatgttgaaagcttggtatcaacgtgttgaaagtaagtt 53775139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 211
Target Start/End: Original strand, 3565936 - 3565965
Alignment:
Q  182 atgcaattctctataattggagagataata 211  Q
    ||||||||||||||||||||||||||||||    
T  3565936 atgcaattctctataattggagagataata 3565965  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 4401 - 4446
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtttttct 308  Q
    ||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  4401 attatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 4446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 25882 - 25930
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtttttcttca 311  Q
    ||||||| ||||||||||| | || || |||||||||||||||||||||    
T  25882 attatgtcgaaagcttggttttaatctgttgaaagtaagtttttcttca 25930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 27618720 - 27618765
Alignment:
Q  258 caagaattatgttgaaagcttggtatcaacctcttgaaagtaagtt 303  Q
    |||| ||||||||||||||||||| ||||  |||||||||||||||    
T  27618720 caaggattatgttgaaagcttggtttcaatttcttgaaagtaagtt 27618765  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 308
Target Start/End: Original strand, 42298375 - 42298420
Alignment:
Q  263 attatgttgaaagcttggtatcaacctcttgaaagtaagtttttct 308  Q
    ||||||| ||||||||||| ||||| ||||||||||||||| ||||    
T  42298375 attatgtcgaaagcttggtttcaacttcttgaaagtaagttcttct 42298420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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