View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_17 (Length: 394)
Name: NF17083_high_17
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Complemental strand, 12965631 - 12965266
Alignment:
| Q |
18 |
gatgtgtgtattgataggttgaaattgcatccatttaactactttatcttgaaattattaatctaaaacaggtcataccaaatgaatttgttaaggcaca |
117 |
Q |
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| T |
12965631 |
gatgtgtgtattgataggttgaaattgcatccatttaactactttatgttgaaattaataatccaaaacaggtcataccaaatgaatttgttaaggcaca |
12965532 |
T |
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| Q |
118 |
tatggacatgatggaaggaagagatgatgctacactttttgttgaccaagataaatggaatgtgaagctcactttaaataaacaatctgcactaacttgt |
217 |
Q |
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| T |
12965531 |
tatggacatgatggaaggaagagatgatgctacactttttgttgaccaagataaatggaatgtgaagctcactttaaataaacaatctgcactaacttgt |
12965432 |
T |
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| Q |
218 |
ggttggagagaattccgtgaagagaataatttgaaatttggtgatgtttgtgtttttgtgctaaacaaaggcaaagaaacagttccatttcaagttatta |
317 |
Q |
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| T |
12965431 |
ggttggagagaattccgtgaagagaataatttgaaatttggtgatgtttgtgtttttgtgctaaacaaaggcaaagaaacagtttcatttcaagttgtta |
12965332 |
T |
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| Q |
318 |
ttttctctttggaaaaggacatgaaaactccttattttgaaggtaaattatatttgattagtctct |
383 |
Q |
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| T |
12965331 |
ttttctctttggaaaaggacatgaaaactccttattttgaaggtaaattatatttgattagtctct |
12965266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 242 - 368
Target Start/End: Original strand, 12867819 - 12867945
Alignment:
| Q |
242 |
aataatttgaaatttggtgatgtttgtgtttttgtgctaaacaaaggcaaagaaacagttccatttcaagttattattttctctttggaaaaggacatga |
341 |
Q |
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| T |
12867819 |
aataatttgaaatttggtgatataagtgtttttatgctaaacaaatgcaaagaaaccatttcattcgaggttgctattttctctttggaaaaggacatga |
12867918 |
T |
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| Q |
342 |
aaactccttattttgaaggtaaattat |
368 |
Q |
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| T |
12867919 |
gcactccctattttgaaggtaatttat |
12867945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 79 - 368
Target Start/End: Original strand, 15135626 - 15135922
Alignment:
| Q |
79 |
tctaaaacaggtcataccaaatgaatttgttaaggcacatatggacatgatggaaggaagagatgatgctacactttttgttgaccaagataaa---tgg |
175 |
Q |
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| T |
15135626 |
tctaaaacaggtgataccaactgaatttgtgaagacacatatgcacatgatggaagaaggaaatg---ctatcctttttgttgatcaagatagaacatgg |
15135722 |
T |
|
| Q |
176 |
aatgt------gaagctcactttaaataaacaatctgcactaacttgtggttggagagaattccgtgaagagaataatttgaaatttggtgatgtttgtg |
269 |
Q |
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| T |
15135723 |
aatgttgatttggatctcactctaaataaacaatttgcactaacaagtggttggagtgaattctgtgctcacaataatttgaaatttggtgatgtttgtg |
15135822 |
T |
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| Q |
270 |
tttttgtgctaaacaaaggcaaagaaacagttccatttcaagttattattttctctttggaaaaggacatgaaaactcctt-attttgaaggtaaattat |
368 |
Q |
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| T |
15135823 |
cttttttgctacacaaatgcaaaacaacggttttaattcaagttgctattttctctcttgaagaagacatgaaaactcattaattttaaaggtaatttat |
15135922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 180 - 361
Target Start/End: Original strand, 49744070 - 49744251
Alignment:
| Q |
180 |
tgaagctcactttaaataaacaatctgcactaacttgtggttggagagaattccgtgaagagaataatttgaaatttggtgatgtttgtgtttttgtgct |
279 |
Q |
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|||| |||||||||||||| |||| | |||||| | |||||||||| |||| |||| | ||||||||||| ||||||||| | ||||||||| |||| |
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| T |
49744070 |
tgaatctcactttaaataatcaatatacactaagtggtggttggagtaaatttcgtgctcacaataatttgaagtttggtgatatctgtgtttttatgct |
49744169 |
T |
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| Q |
280 |
aaacaaaggcaaagaaacagttccatttcaagttattattttctctttggaaaaggacatgaaaactccttattttgaaggt |
361 |
Q |
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| T |
49744170 |
gaacaaatgcaaaggaacagtttcattccaagttaagattttctctctagaaaaagacatgagcactccttattttgaaggt |
49744251 |
T |
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