View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_19 (Length: 384)
Name: NF17083_high_19
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 5e-81; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 215 - 371
Target Start/End: Complemental strand, 5339624 - 5339468
Alignment:
| Q |
215 |
atgggtagctattcatctgaacatatttggtgatgttgatgttgatgatatggatttcgtgtacgttgatatttcgaatttgccattgttgaacactgat |
314 |
Q |
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| T |
5339624 |
atgggtagctattcatctgaacatatttggtgatgttgatgttgatgatatggaattcgtgtacgttgatatttcgaatttgccattgttgaacactgat |
5339525 |
T |
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| Q |
315 |
cttgaggaagaagggacttttcctcttgaagttgaagattttcgtgattatattctt |
371 |
Q |
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| T |
5339524 |
cttgaggaagaagggacttttcctcttgaagttgaagattttcgtgattatattctt |
5339468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 22 - 187
Target Start/End: Complemental strand, 5339797 - 5339644
Alignment:
| Q |
22 |
acactggcctcattcgtcatggttatttacttctttattactacacatatatattttaaatactaacattttattatatagtacattttattgtctagta |
121 |
Q |
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| T |
5339797 |
acactggcctcattcgtcatggttatttacttctttattacaacacatatatattttaaatactaacattttattatatagtacattttattgtctagta |
5339698 |
T |
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| Q |
122 |
agtgtatgacaaatggtaaaatactgtagaaacatttaatgtgttattgaatttaagggtttaact |
187 |
Q |
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| T |
5339697 |
agtgtagcacaaatggt------------aaacatttaatgtgttattgaatttaaaggtttaact |
5339644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 275 - 351
Target Start/End: Complemental strand, 5325620 - 5325544
Alignment:
| Q |
275 |
gtacgttgatatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaag |
351 |
Q |
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| T |
5325620 |
gtacattgatctttcaaacttgccaatgttgaacactgatcttgagaaagaaggaacttttcctgctgaagttgaag |
5325544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 283 - 350
Target Start/End: Original strand, 5343723 - 5343790
Alignment:
| Q |
283 |
atatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaa |
350 |
Q |
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| T |
5343723 |
atatttcaaatctaccattgttgaacactgatcttgagaaagaagggacttatccagttgaagttgaa |
5343790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 275 - 359
Target Start/End: Original strand, 5351500 - 5351584
Alignment:
| Q |
275 |
gtacgttgatatttcgaatttgccattgttgaacactgatcttgaggaagaagggacttttcctcttgaagttgaagattttcgt |
359 |
Q |
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| T |
5351500 |
gtacattgatatttcaactttaccaatgttgaacactgatctagagatagaagggaattttccagctgaagttgaagcttttcgt |
5351584 |
T |
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