View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_high_20 (Length: 372)
Name: NF17083_high_20
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 24563559 - 24563905
Alignment:
| Q |
11 |
cataggagatatcttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcc |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24563559 |
cataggagatatcttccaaagcttttgagataacagtgtgatccgaaccaattccaagaaggttcataacttgaatcagagcaaatgtattggaaaagcc |
24563658 |
T |
|
| Q |
111 |
cttagcagccataccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaat |
210 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24563659 |
cttagtagccataccacgatcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaat |
24563758 |
T |
|
| Q |
211 |
ctcaaactacatccgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24563759 |
ctcaaactacatccgtaattaagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactcacgtaaatccctgtatgcccgt |
24563858 |
T |
|
| Q |
311 |
tgaaatcattaattccaatcattctctcatttcacttcacttataat |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24563859 |
tgaaatcattaattccaatcattctctcatttcacttcacttataat |
24563905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 126; Significance: 7e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 130 - 357
Target Start/End: Original strand, 9798586 - 9798807
Alignment:
| Q |
130 |
tcaactcattatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaat |
229 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||||||||| ||| | || |||| |||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
9798586 |
tcaactccttatctttagttgagcatatcttcttggattccctccatttgtctgctctaataatagtgtatcattaaaaatctcgaactacatccgtaat |
9798685 |
T |
|
| Q |
230 |
taagaaaccaaaccaacaatggtttagataagttcgcaactgctttaatttctagactca--cgtaaatccctgtatgcccgttgaaatcattaattcca |
327 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| || |||| |||||||| ||| ||||||||||| ||||||||||||||| | |
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|
| T |
9798686 |
taagaaaccaaatcaacaatggtttagataagttcccaagtgttttagtttctagattcattcgtaaatccct--------tttgaaatcattaatttct |
9798777 |
T |
|
| Q |
328 |
atcattctctcatttcacttcacttataat |
357 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
9798778 |
atcattctctcatttcacttcacttataat |
9798807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 1e-63; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 147 - 350
Target Start/End: Complemental strand, 45536060 - 45535852
Alignment:
| Q |
147 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
246 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||| || | |||||||||||||| ||||||||||||||| |
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|
| T |
45536060 |
gttgagcatatcttcttggatttcctccctttttctattctaataatagtgtatcattaaaaatttcgacctacatccgtaattcagaaaccaaaccaac |
45535961 |
T |
|
| Q |
247 |
-aatggtttagataagttcgcaactgct----ttaatttctagactcacgtaaatccctgtatgcccgttgaaatcattaattccaatcattctctcatt |
341 |
Q |
| |
|
|||||||||||||||||| ||| || | |||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45535960 |
aaatggtttagataagttcccaagtgttttaattaatttctagactcatgtaaatccttgtatacccgttgaaatcattaattccaatcattctctcatt |
45535861 |
T |
|
| Q |
342 |
tcacttcac |
350 |
Q |
| |
|
||| ||||| |
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|
| T |
45535860 |
tcaattcac |
45535852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 44337428 - 44337525
Alignment:
| Q |
36 |
tgagataacagtgtgatccgaaccaattccaagaaggttcatagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
133 |
Q |
| |
|
||||||| |||||||||||||||||| | ||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
44337428 |
tgagatagcagtgtgatccgaaccaaattcaagaaggtgcgtaacttgaatcagagcaaatgtattggaaaagcccttagtagccataccacgatcaa |
44337525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 139 - 289
Target Start/End: Original strand, 44337629 - 44337779
Alignment:
| Q |
139 |
tatctttagttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaa-c |
237 |
Q |
| |
|
|||||| |||||| |||| ||||||||||||||| ||||| ||||||| |||||||||||||||||| | | || || || |||||| ||||| | |
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|
| T |
44337629 |
tatcttcagttgaacatagtttcttggattccctcacttttc-tgttctaataatagtgtatcattaaattttttgaaatatatttgtaattcagaaaac |
44337727 |
T |
|
| Q |
238 |
caaaccaacaatggtttagataagttcgcaactgctttaatttctagactca |
289 |
Q |
| |
|
||||| ||||||||||||||||||||| ||| || ||||| ||||||||||| |
|
|
| T |
44337728 |
caaactaacaatggtttagataagttcccaagtgttttaacttctagactca |
44337779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 45536235 - 45536177
Alignment:
| Q |
75 |
catagcttgaatcagagcaaatgtattggaaaagcccttagcagccataccacgatcaa |
133 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| | ||| ||||||||||||| |
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|
| T |
45536235 |
cataacttgaatcagagcaaatgtattggaaaagcccttggtagctataccacgatcaa |
45536177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 147 - 249
Target Start/End: Complemental strand, 19190303 - 19190201
Alignment:
| Q |
147 |
gttgagcatatcttcttggattccctccctttttatgttctattaatagtgtatcattaaaaatctcaaactacatccgtaattaagaaaccaaaccaac |
246 |
Q |
| |
|
|||||||||| |||||||||||||||| |||||| ||||||| ||||||| |||||||||| | || || ||||| | ||||| |||||| |||||||| |
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|
| T |
19190303 |
gttgagcatagcttcttggattccctcactttttctgttctaataatagtacatcattaaaattttcgaaatacattcataattcagaaactaaaccaac |
19190204 |
T |
|
| Q |
247 |
aat |
249 |
Q |
| |
|
||| |
|
|
| T |
19190203 |
aat |
19190201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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