View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_high_21 (Length: 355)
Name: NF17083_high_21
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 33633611 - 33633268
Alignment:
| Q |
1 |
agcagcttagtactgatcctatgaatcctgatctcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633611 |
agcagcttagtactgatcctatgaatcctgatctcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatg |
33633512 |
T |
|
| Q |
101 |
gatgtagaagtctagagctaattggattcagcttggggactcggaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaa |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633511 |
gatgcagaagtctagagctaattggattcagcttggggactcg-aacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaa |
33633413 |
T |
|
| Q |
201 |
gttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgat |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33633412 |
gttcctcataacagaagatggcaccagaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgat |
33633313 |
T |
|
| Q |
301 |
tcattacctatggtggacaaaaatattgttaaaagaggtcctatg |
345 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33633312 |
tcattacctatggtggacaaaaatgttgttaaaagaggtcctatg |
33633268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 256 - 345
Target Start/End: Complemental strand, 18263277 - 18263189
Alignment:
| Q |
256 |
gagattagagggttctatttaaaattgatgggtagttccgttgattcattacctatggtggacaaaaatattgttaaaagaggtcctatg |
345 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
18263277 |
gagattagaggcttctatt-aaaattgatgggtagttccgttgattcataacctatggtggacaaaaatatggttaaaaaaggtcctatg |
18263189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 3940361 - 3940019
Alignment:
| Q |
2 |
gcagcttagtactgatcctatgaatcctgatctcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatgg |
101 |
Q |
| |
|
|||||||||| | ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940361 |
gcagcttagttcagatccgatgaatcttgatctcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatgg |
3940262 |
T |
|
| Q |
102 |
atgtagaagtctagagctaattggattcagcttggggactcggaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaag |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940261 |
atgcagaagtctagagctaattggattcagcttggggactcg-aacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaag |
3940163 |
T |
|
| Q |
202 |
ttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgatt |
301 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940162 |
ttcctcataacagaagatgacaccagaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgatt |
3940063 |
T |
|
| Q |
302 |
cattacctatggtggacaaaaatattgttaaaagaggtcctatg |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3940062 |
cattacctatggtggacaaaaatattgttaaaagaggtcctatg |
3940019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 30282627 - 30282285
Alignment:
| Q |
2 |
gcagcttagtactgatcctatgaatcctgatctcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatgg |
101 |
Q |
| |
|
|||||||||| | ||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30282627 |
gcagcttagttcagatccgatgaatcttgatctcattgaagctgaaaaagtttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatgg |
30282528 |
T |
|
| Q |
102 |
atgtagaagtctagagctaattggattcagcttggggactcggaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaag |
201 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30282527 |
atgcagaagtctagagctaattggattcagcttggggactcg-aacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaag |
30282429 |
T |
|
| Q |
202 |
ttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgatt |
301 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30282428 |
ttcctcataacagaagatgacaccagaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgatt |
30282329 |
T |
|
| Q |
302 |
cattacctatggtggacaaaaatattgttaaaagaggtcctatg |
345 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30282328 |
ctttacctatggtggacaaaaatattgttaaaagaggtcctatg |
30282285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 2 - 345
Target Start/End: Complemental strand, 35168628 - 35168287
Alignment:
| Q |
2 |
gcagcttagtactgatcctatgaatcctgatctcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatgg |
101 |
Q |
| |
|
|||||||||| | ||||| ||||||| |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
35168628 |
gcagcttagttcagatccgatgaatcttgatctcattgaagctgaaaaagtttgtttgtcctctcttaaaaagtggagtactatagaggagcagatatgg |
35168529 |
T |
|
| Q |
102 |
atgtagaagtctagagctaattggattcagcttggggactcggaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaag |
201 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
35168528 |
atctagaaatctagagctaattggattcagcttggggactc--aacacaaaatttttccatgcctttgcaaaggaaagaagatgtcagaatatcattaag |
35168431 |
T |
|
| Q |
202 |
ttcctcataacagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgatt |
301 |
Q |
| |
|
||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
35168430 |
ttcctcataacagaagatggcaccaaaattgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttctgttgatt |
35168331 |
T |
|
| Q |
302 |
cattacctatggtggacaaaaatattgttaaaagaggtcctatg |
345 |
Q |
| |
|
| ||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
35168330 |
cgttacctatggtggacaaaaatatcgtcaagagaggtcctatg |
35168287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 324
Target Start/End: Original strand, 23121291 - 23121602
Alignment:
| Q |
12 |
actgatcctatgaatcctgatctcattgaagctgaaaaaatttgtttgtcctctcttgaaaagtggagtactatagaggagaagatatggatgtagaagt |
111 |
Q |
| |
|
||||||||| |||| |||| |||||||||| |||||| |||| || | |||||||||| |||||| || | || || ||||||||| | |||| | |
|
|
| T |
23121291 |
actgatcctctgaactctgacctcattgaagtggaaaaaggttgtatggcatctcttgaaatgtggagcacaaatgaagaaaagatatggcttcagaaat |
23121390 |
T |
|
| Q |
112 |
ctagagctaattggattcagcttggggactcggaacactaaatttttccatgcctatgcaaaggaaagaagatgtcagaataatattaagttcctcataa |
211 |
Q |
| |
|
| ||||| || ||||| || |||||||| || || || ||||| || |||||||||||||| || |||||||||||||| |||| |||| ||||| |
|
|
| T |
23121391 |
caagagcaaactggatccaacttggggattct-aatacaaaattctttcatgcctatgcaaaagagagaagatgtcagaaccatatcaagtatctcatct |
23121489 |
T |
|
| Q |
212 |
cagaagatggcactagaaatgacaagcataacctcatcaaggaggagattagagggttctatttaaaattgatgggtagttccgttgattcattacctat |
311 |
Q |
| |
|
| |||||||| | |||| | | || ||| | | |||||| || |||||||||| ||||| | || |||||||| ||| | | ||| |||| ||||| |
|
|
| T |
23121490 |
ctgaagatgggaacagaattcaaaaccatcatcacatcaaagaagagattagagatttctacctgaagttgatgggaagtgcagcagatacattgcctat |
23121589 |
T |
|
| Q |
312 |
ggtggacaaaaat |
324 |
Q |
| |
|
||||||||||||| |
|
|
| T |
23121590 |
ggtggacaaaaat |
23121602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University