View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_22 (Length: 349)
Name: NF17083_high_22
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 345
Target Start/End: Complemental strand, 37442297 - 37441959
Alignment:
| Q |
7 |
atttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctcttgttatcaccaaaaacttgatctccat |
106 |
Q |
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| T |
37442297 |
atttgttgtctctgcagataataattaacttatctgttgtgtagaggattaggaccagtgaagactttcctcttgttatcaccaaaaacttgatctccat |
37442198 |
T |
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| Q |
107 |
ttttgtttgcattgtttactaaatggaatttagaagatgatttcaactcagaactagcatatgaaccagctctggatctctcaaacctgtctttatcaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37442197 |
ttttgtttgcattgtttactaaatggaatttagaagatgaattcaactcagaactagcatatgaaccagctctggatctctcaaacctgtctttatcaat |
37442098 |
T |
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| Q |
207 |
taatgcttcacatgtagcagtgctcagtagcaacatcatcagaagaagaagcataaaaatgataaaaacacacattttttggtacttgctctttacacta |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37442097 |
taatgcttcacatgtagcagtgctcagtagcaacatcatcatcagaagaagcataaaaatgataaaaacacacattttttggtacttgctctttacacta |
37441998 |
T |
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| Q |
307 |
atcatggaaaaataaaaataaagtatgaaacaaattttc |
345 |
Q |
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| T |
37441997 |
atcatggaaaaataaaaataaagtactagacaaattttc |
37441959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 34940060 - 34939946
Alignment:
| Q |
33 |
aacttatctgttgtgtagaggattaggaccagtgaagactttcctcttgttatcaccaaaaacttgatctccatttttgtttgcattgtttactaaatgg |
132 |
Q |
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|||||||||||||||||||||||| ||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
34940060 |
aacttatctgttgtgtagaggatttggaccagtgtacactttcctcttttcatcaccaaaaacttgatctccatttttgtttgcattgtttccttcatgg |
34939961 |
T |
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| Q |
133 |
aatttagaagatgat |
147 |
Q |
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| T |
34939960 |
aatctagatgatgat |
34939946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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