View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_23 (Length: 342)
Name: NF17083_high_23
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 51882051 - 51881736
Alignment:
| Q |
1 |
tggtgtggtggccgagatgggagagttaaggagttgagtgataaaggtaatgtaagatttgatttccacatccattaaatactatattgctagaaagaag |
100 |
Q |
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| T |
51882051 |
tggtgtggtggccgaggcgggagagttaaggagttgagtgataaagataatgtaagatttgatttccacatccattaaatactatattgctagaaaaaaa |
51881952 |
T |
|
| Q |
101 |
aaagnnnnnnnntactatcatattcttatttaaattcacannnnnnnnccaccaaatttaaattcacatgnnnnnnngacagaataagttcacatttatc |
200 |
Q |
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|| |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||| || |
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| T |
51881951 |
aa----------tactatcatattcttatttaaattcacattttttttccaccaaatttaaattcacatgtttttttgacaggataagttcacatttttc |
51881862 |
T |
|
| Q |
201 |
gatttttaatacattaagtgtgttcacttttttatcacccatatggccatatgtagcannnnnnnacaaaagaaaagttagcacaaagatgccaaacaaa |
300 |
Q |
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| T |
51881861 |
ggtttttaatacattaagtgtgttcacttttttatcacccatgtggccatatgtagcatttttttacaaaagaaaagttagcacaaagatgccaaacaaa |
51881762 |
T |
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| Q |
301 |
cataaatggaatacaaaccaaataca |
326 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
51881761 |
cataaatggaatacaaaccaaataca |
51881736 |
T |
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