View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_28 (Length: 332)
Name: NF17083_high_28
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_28 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 7 - 332
Target Start/End: Complemental strand, 48464899 - 48464574
Alignment:
| Q |
7 |
gcgccaacaccgcacctgtgattctaccgaaagcagataccagttagctccaaccacctgatatgccacagccacaaacaagaatttggtgatcaaaaca |
106 |
Q |
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| T |
48464899 |
gcgccaacaccgcacctgtgattctaccgaaagcagataccagttagctccaaccacctgatatgccacagccacaaacaagaatttggtgatcaaaaca |
48464800 |
T |
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| Q |
107 |
ttttgtaatggtaagtaggaacatatataagatagttgaatctgaagaatgcaattaaatcaatttacatgacttgctagcatgtagaggaaaagattgt |
206 |
Q |
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| T |
48464799 |
ttttgtaatggtaagtaggaacatatataagatagttgaatctgaagaatgcaattaaatcaatttacatgacttgctagcatgtagaggaaaagattgt |
48464700 |
T |
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| Q |
207 |
aaacagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaatagcggacgaattcgcagtagtcttggcacatactgaat |
306 |
Q |
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| T |
48464699 |
aaacagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaatagcggacgaattcgcagtagtcttggcacatactgaat |
48464600 |
T |
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| Q |
307 |
taatactgtatatttcaacaaatcct |
332 |
Q |
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| T |
48464599 |
taatactgtatatttcaacaaatcct |
48464574 |
T |
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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 171 - 267
Target Start/End: Original strand, 10067424 - 10067520
Alignment:
| Q |
171 |
ttacatgacttgctagcatgtagaggaaaagattgtaaacagctccagcccatgctgtctctgtcaatatgcctgaagttctagttacttctttgaa |
267 |
Q |
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| T |
10067424 |
ttacatgacttgctagcatataaagaaagagattataagcagctccagcccatgctgtctcagttaatataccagaagtgcttgttacttcattgaa |
10067520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 222
Target Start/End: Complemental strand, 50398286 - 50398236
Alignment:
| Q |
172 |
tacatgacttgctagcatgtagaggaaaagattgtaaacagctccagccca |
222 |
Q |
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| T |
50398286 |
tacatgacttgctaacatgtaaagtaaaagattgtaagcagctccggccca |
50398236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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