View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17083_high_32 (Length: 299)
Name: NF17083_high_32
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_32 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 36418253 - 36417974
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36418253 |
agagccaaatccaccttgtccaagcttattctcaagatcacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
36418154 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaac |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36418153 |
ttgctttgggtatcattctcttccccagaggaatcttggtttggttgcggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaac |
36418054 |
T |
|
| Q |
201 |
ttaaacattttgataaggtatatttctttttggctcaccnnnnnnntcttatattttacatttttctagtgttgtacgtg |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
36418053 |
ttaaacattttgataaggtatatttctttttggttctccaaaaaaatcttatattttacatttttctagtgttgtacgtg |
36417974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 5 - 280
Target Start/End: Complemental strand, 36428229 - 36427954
Alignment:
| Q |
5 |
ccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtgttgc |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36428229 |
ccaaatccaccttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtgttgc |
36428130 |
T |
|
| Q |
105 |
tttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaacttaa |
204 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36428129 |
tttgggtatcattctcttccccagaggaatcttggtttggttgcggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaacttaa |
36428030 |
T |
|
| Q |
205 |
acattttgataaggtatatttctttttggctcaccnnnnnnntcttatattttacatttttctagtgttgtacgtg |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
36428029 |
acattttgataaggtatatttctttttggctctcaaaaaaaatcttatattttacatttttctagtgttgtacgtg |
36427954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36434762 - 36434528
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36434762 |
agagccaaatccaccttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtg |
36434663 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaac |
200 |
Q |
| |
|
|||||||| | |||||| ||| ||| |||||||||||||| ||| ||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
36434662 |
ttgctttgaacaccgttcttttctccaaaggaatcttggtttaattgccgcaccattttatctgaagttacaaatggcatgaggtaagatttcaatcaac |
36434563 |
T |
|
| Q |
201 |
ttaaacattttgataaggtatatttctttttggctc |
236 |
Q |
| |
|
||||||||||||| | ||| |||||||||||||||| |
|
|
| T |
36434562 |
ttaaacattttga-agggtgtatttctttttggctc |
36434528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36388846 - 36388606
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36388846 |
agagccaaatccaccttgtccaagcttattctcatgaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtgtg |
36388747 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatca------ttttatctgaagttacaaatgacataaggtaagatttca |
194 |
Q |
| |
|
|||||||| | | |||||||| |||||||||||||||||| ||| ||||| ||| ||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
36388746 |
ttgctttgagcaatattctcttctccagaggaatcttggtttaattgcatcatcaatttattttcatctgaagttacaaatggcatgaggtaagatttca |
36388647 |
T |
|
| Q |
195 |
atcaacttaaacattttgataaggtatatttctttttggctc |
236 |
Q |
| |
|
||||||| | ||||||| | | |||||||||||||||||||| |
|
|
| T |
36388646 |
atcaactaacacatttt-aaagggtatatttctttttggctc |
36388606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 36375127 - 36374893
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||| | ||| |||||||||||| || ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
36375127 |
agagccaaatccaccttgtccaagcttattctgatgactaaaatctcttgtagctgttataatcgttttaaagctgaaaaagggaagatttggatgtgtg |
36375028 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaac |
200 |
Q |
| |
|
|||||||| | | | |||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
36375027 |
ttgctttgagcaccattctcttcttcagaggaatcttggttaaattgccgcatcattttatctgaagttacaaatggcacgaggtaagatttcaatcaac |
36374928 |
T |
|
| Q |
201 |
ttaaacattttgataaggtatatttctttttggctc |
236 |
Q |
| |
|
|| | |||||||| ||||||||||||||||||||| |
|
|
| T |
36374927 |
ttgcaaattttgat-aggtatatttctttttggctc |
36374893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 36406168 - 36405979
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36406168 |
agagccaaatccaccttgtccaagcttattcttatgatcacaattttttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgtctg |
36406069 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagat |
190 |
Q |
| |
|
||| || | | | | |||||||| | ||||| || |||||| ||| |||||||||||||| |||||||||||||||| ||||||||| |
|
|
| T |
36406068 |
ttgtttggagcaccattctcttctactgaggagtcatggtttatttgccgcatcattttatctaaagttacaaatgacatgaggtaagat |
36405979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 36398434 - 36398221
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
||||||||||||||||| ||||||||||||| | ||| |||| ||||||||||| |||||||||||||| |||||||||||||||||||||||| ||| |
|
|
| T |
36398434 |
agagccaaatccacctttcccaagcttattctgatgactgcaatatcttgtagctgacattatcgttttaaggctgaaaaagggtagatttggatgtgtg |
36398335 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaac |
200 |
Q |
| |
|
||||||| | ||| |||||||| ||||| |||||| |||| ||| |||||| ||||| |||||| |||||| |||| ||||||| | ||||| || |
|
|
| T |
36398334 |
gtgctttgagcatcattctcttctgcagagtaatcttcttttgattgctgcatcactttatttgaagtcacaaataacatgcggtaagactccaatctac |
36398235 |
T |
|
| Q |
201 |
ttaaacattttgat |
214 |
Q |
| |
|
||| |||||||||| |
|
|
| T |
36398234 |
ttacacattttgat |
36398221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 36369889 - 36369680
Alignment:
| Q |
1 |
agagccaaatccaccttgtccaagcttattctcaagaccacaatttcttgtagctgtcattatcgttttaaagctgaaaaagggtagatttggatgcgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| | ||||| |||||||||| || || ||| |||||||||| || || |||||| ||| ||| |
|
|
| T |
36369889 |
agagccaaatccaccttgtccaagcttattctcatgactaaaatttgttgtagctgttataattgttctaaagctgaagaatggatgatttgaatgtgtg |
36369790 |
T |
|
| Q |
101 |
ttgctttgggtatcgttctcttccccagaggaatcttggtttggttgtggcatcattttatctgaagttacaaatgacataaggtaagatttcaatcaac |
200 |
Q |
| |
|
| |||||| | | | ||||| ||||| |||| |||||||| ||| ||| ||||||||||||||||||| | | || ||||| ||||| |||||| |
|
|
| T |
36369789 |
tagctttgagcaccaatctct---ccagacgaatattggtttgattgatgcagcattttatctgaagttacagaaggaatgaggtaggattttaatcaat |
36369693 |
T |
|
| Q |
201 |
ttaaacattttga |
213 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
36369692 |
ttacacattttga |
36369680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University