View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17083_high_36 (Length: 278)
Name: NF17083_high_36
Description: NF17083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17083_high_36 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 16184301 - 16184033
Alignment:
| Q |
1 |
caaaaccttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16184301 |
caaaaccttgcatggcaaaaacagcagcaataaatgcacctctagtttttttgttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
16184202 |
T |
|
| Q |
101 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16184201 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactctttggacttgatccaaaagagagtcctgaagcaactgaacaaaccacc |
16184102 |
T |
|
| Q |
201 |
atgagaataagtgttaaaccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaataat |
269 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16184101 |
atgagaataagtgttaaaccatagacttttttcctaccaagtttgtcgccaagccaaccaaagaataat |
16184033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 16223691 - 16223423
Alignment:
| Q |
1 |
caaaaccttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
100 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16223691 |
caaaaccttgcatggcaaaaacagcagcaataaatgcacctctagtttttttgttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
16223592 |
T |
|
| Q |
101 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16223591 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactctttggacttgatccaaaagagagtcctgaagcaactgaacaaaccacc |
16223492 |
T |
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| Q |
201 |
atgagaataagtgttaaaccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaataat |
269 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
16223491 |
atgagaataagtgttaaaccatagacttttttcctaccaagtttgtcgccaagccaaccaaagaataat |
16223423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 16175061 - 16175329
Alignment:
| Q |
1 |
caaaaccttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16175061 |
caaaaccttgcatggcaaaaacagcagcaataaatgcacctctagtttttttgttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
16175160 |
T |
|
| Q |
101 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaacaaaccacc |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| |
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| T |
16175161 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactctttggacttgagccaaaagagagtcctgaagcaacagaacaaacaacc |
16175260 |
T |
|
| Q |
201 |
atgagaataagtgttaaaccatagacttttttccgaccaagtttgtcgccaagccaaccaaagaataat |
269 |
Q |
| |
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||||||||||| || |||||||| |||||||| | || | |||||| ||||||||||||||||||||| |
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| T |
16175261 |
atgagaataagagtcaaaccatatactttttttcttcccattttgtccccaagccaaccaaagaataat |
16175329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 57 - 265
Target Start/End: Complemental strand, 33109345 - 33109137
Alignment:
| Q |
57 |
gcatattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttg |
156 |
Q |
| |
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||||| |||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||| |||| |
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| T |
33109345 |
gcatactcagacataattgtagcagaaagagggtaatcaccaccaattccaaaaccaagccaaaacctgaagaaacaaagtgttgccatgacaccctttg |
33109246 |
T |
|
| Q |
157 |
gacttgatccaaaagagagtcctgaagcaactgaacaaaccaccatgagaataagtgttaaaccatagacttttttccgaccaagtttgtcgccaagcca |
256 |
Q |
| |
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|||| ||||||||| || ||||| || | |||||| | ||||| || ||||| |||| |||||| |||||||||| || | |||||| |||||||| |
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| T |
33109245 |
gactatttccaaaagatagacctgaggcgagcgaacaacctaccataagcataagggttataccataaacttttttccttcctaatttgtcaccaagcca |
33109146 |
T |
|
| Q |
257 |
accaaagaa |
265 |
Q |
| |
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||| ||||| |
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| T |
33109145 |
accgaagaa |
33109137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 33115436 - 33115246
Alignment:
| Q |
1 |
caaaaccttgcatagcaaaaacagcagcaataaatgcacctctagnnnnnnngttagcatattcagacatgattgtagctgaaagagggtaatcaccacc |
100 |
Q |
| |
|
|||||||||||||||| |||||||| || ||||||||||| | || || ||||| ||||||||||| ||||||||||||||||||||||| || |
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| T |
33115436 |
caaaaccttgcatagcgaaaacagccgctataaatgcaccacgagtctttttatttgcatactcagacatgatagtagctgaaagagggtaatcaccgcc |
33115337 |
T |
|
| Q |
101 |
aataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttggacttgatccaaaagagagtcctgaagcaactgaa |
191 |
Q |
| |
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||| ||||| |||||||| ||||| ||||||||||| || ||||||||| |||| ||| | ||||||||||| || ||||||| |||| |
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| T |
33115336 |
aattccaaatccaagccagaacctgaagaaacaaagggtagccataacagttttgggatctttcccaaaagagagaccagaagcaagtgaa |
33115246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 30615885 - 30615961
Alignment:
| Q |
60 |
tattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaag |
136 |
Q |
| |
|
||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||||| || || ||||| ||||| |
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| T |
30615885 |
tattcagacataattgtagcagaaagtggataatcaccaccaataccaaaaccaagccagaatctgaagaagcaaag |
30615961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 127
Target Start/End: Original strand, 9699501 - 9699568
Alignment:
| Q |
60 |
tattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaa |
127 |
Q |
| |
|
|||||||||||||| || ||||| | |||||| || |||||||||||||| ||||||||||||||||| |
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|
| T |
9699501 |
tattcagacatgatggttgctgataaagggtagtctccaccaataccaaatccaagccaaaacctaaa |
9699568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 136
Target Start/End: Original strand, 30620636 - 30620712
Alignment:
| Q |
60 |
tattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaag |
136 |
Q |
| |
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||||||||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||| || || ||||| ||||| |
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| T |
30620636 |
tattcagacataattgttgcagaaagtggataatctccaccaataccgaaaccaagccagaatctgaagaagcaaag |
30620712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 37315832 - 37315911
Alignment:
| Q |
57 |
gcatattcagacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaag |
136 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |
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|
| T |
37315832 |
gcatattcagacataatagtagctgaaagagggtaatcaccaccaataccaaaacctagccagaatctaaagaaacaaag |
37315911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 66 - 158
Target Start/End: Complemental strand, 38893436 - 38893344
Alignment:
| Q |
66 |
gacatgattgtagctgaaagagggtaatcaccaccaataccaaaaccaagccaaaacctaaagaaacaaagtgttgccataacactttttgga |
158 |
Q |
| |
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||||| || ||||| ||||| |||||||| |||||||||||||| ||||||||||| | ||||| ||||| |||||||| || |||||||| |
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| T |
38893436 |
gacattatagtagccgaaagcgggtaatctccaccaataccaaacccaagccaaaaacggaagaagcaaagagttgccatgaccgtttttgga |
38893344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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